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2EFB
Biol. Unit 2
Info
Asym.Unit (215 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (105 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF GOAT LACTOPEROXIDASE WITH PHOSPHATE AT 2.94 A RESOLUTION
Authors
:
A. K. Singh, G. Hariprasad, R. Prem Kumar, N. Singh, A. Bhushan, S. Shar P. Kaur, T. P. Singh
Date
:
22 Feb 07 (Deposition) - 06 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.94
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Lactoperoxidase, Complex, Phosphate, Milk Protein, Oxidoreductase, Peroxidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. K. Singh, G. Hariprasad, R. Prem Kumar, N. Singh, A. Bhushan, S. Sharma, P. Kaur, T. P. Singh
Crystal Structure Of The Complex Of Goat Lactoperoxidase With Phosphate At 2. 94 A Resolution
To Be Published
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Hetero Components
(7, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: CARBONATE ION (CO3a)
3b: CARBONATE ION (CO3b)
4a: CYANIDE ION (CYNa)
5a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
6a: ALPHA-D-MANNOSE (MANa)
6b: ALPHA-D-MANNOSE (MANb)
6c: ALPHA-D-MANNOSE (MANc)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7j: N-ACETYL-D-GLUCOSAMINE (NAGj)
7k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7l: N-ACETYL-D-GLUCOSAMINE (NAGl)
7m: N-ACETYL-D-GLUCOSAMINE (NAGm)
7n: N-ACETYL-D-GLUCOSAMINE (NAGn)
7o: N-ACETYL-D-GLUCOSAMINE (NAGo)
7p: N-ACETYL-D-GLUCOSAMINE (NAGp)
8a: 1-(OXIDOSULFANYL)METHANAMINE (OSMa)
9a: PHOSPHATE ION (PO4a)
9b: PHOSPHATE ION (PO4b)
9c: PHOSPHATE ION (PO4c)
9d: PHOSPHATE ION (PO4d)
9e: PHOSPHATE ION (PO4e)
10a: THIOCYANATE ION (SCNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CO3
1
Ligand/Ion
CARBONATE ION
4
CYN
-1
Ligand/Ion
CYANIDE ION
5
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
6
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
7
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
OSM
1
Ligand/Ion
1-(OXIDOSULFANYL)METHANAMINE
9
PO4
2
Ligand/Ion
PHOSPHATE ION
10
SCN
-1
Ligand/Ion
THIOCYANATE ION
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Sites
(18, 18)
Info
All Sites
01: AC7 (SOFTWARE)
02: CC2 (SOFTWARE)
03: CC3 (SOFTWARE)
04: CC4 (SOFTWARE)
05: CC5 (SOFTWARE)
06: CC6 (SOFTWARE)
07: CC7 (SOFTWARE)
08: CC8 (SOFTWARE)
09: CC9 (SOFTWARE)
10: DC1 (SOFTWARE)
11: DC2 (SOFTWARE)
12: DC3 (SOFTWARE)
13: DC4 (SOFTWARE)
14: DC5 (SOFTWARE)
15: DC6 (SOFTWARE)
16: DC7 (SOFTWARE)
17: DC8 (SOFTWARE)
18: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
ASN A:241 , ALA A:244 , TRP A:384 , NAG A:603 , HOH A:2171 , PHE B:70
BINDING SITE FOR RESIDUE NAG A 602
02
CC2
SOFTWARE
ASN B:95 , NAG B:597 , CO3 B:2007
BINDING SITE FOR RESIDUE NAG B 596
03
CC3
SOFTWARE
NAG B:596 , MAN B:598
BINDING SITE FOR RESIDUE NAG B 597
04
CC4
SOFTWARE
NAG B:597
BINDING SITE FOR RESIDUE MAN B 598
05
CC5
SOFTWARE
ASN B:205 , SER B:208 , ALA B:214 , VAL B:215 , GLN B:217 , NAG B:600
BINDING SITE FOR RESIDUE NAG B 599
06
CC6
SOFTWARE
GLN B:217 , TRP B:220 , NAG B:599 , BMA B:601 , HOH B:2170
BINDING SITE FOR RESIDUE NAG B 600
07
CC7
SOFTWARE
NAG B:600
BINDING SITE FOR RESIDUE BMA B 601
08
CC8
SOFTWARE
PHE A:70 , LYS A:485 , ASN B:241 , ALA B:244 , NAG B:603
BINDING SITE FOR RESIDUE NAG B 602
09
CC9
SOFTWARE
LYS A:485 , NAG B:602 , BMA B:604 , HOH B:2094 , HOH B:2177
BINDING SITE FOR RESIDUE NAG B 603
10
DC1
SOFTWARE
NAG B:603 , HOH B:2148
BINDING SITE FOR RESIDUE BMA B 604
11
DC2
SOFTWARE
ASN B:332 , NAG B:606
BINDING SITE FOR RESIDUE NAG B 605
12
DC3
SOFTWARE
NAG B:605 , HOH B:2074
BINDING SITE FOR RESIDUE NAG B 606
13
DC4
SOFTWARE
GLU B:363 , TYR B:365 , ARG B:397 , HIS B:558 , ILE B:559 , THR B:560 , LYS B:561
BINDING SITE FOR RESIDUE PO4 B 2003
14
DC5
SOFTWARE
ALA B:44 , ARG B:45 , TRP B:46 , LEU B:47 , SER B:340 , ASN B:341 , VAL B:342 , MET B:446 , TRP B:452 , HOH B:2118
BINDING SITE FOR RESIDUE PO4 B 2004
15
DC6
SOFTWARE
ASN B:95 , ARG B:96 , ARG B:504 , ARG B:506 , NAG B:596
BINDING SITE FOR RESIDUE CO3 B 2007
16
DC7
SOFTWARE
ASP B:110 , THR B:184 , PHE B:186 , ASP B:188 , SER B:190
BINDING SITE FOR RESIDUE CA B 1000
17
DC8
SOFTWARE
MET B:101 , GLY B:104 , GLN B:105 , ASP B:108 , ASP B:112 , PHE B:113 , ALA B:114 , ARG B:255 , GLU B:258 , THR B:344 , PHE B:347 , ARG B:348 , GLY B:350 , HIS B:351 , VAL B:354 , PHE B:380 , LEU B:417 , ARG B:440 , OSM B:2021 , HOH B:2126 , HOH B:2155
BINDING SITE FOR RESIDUE HEM B 1021
18
DC9
SOFTWARE
GLN B:105 , HIS B:109 , ARG B:255 , GLU B:258 , HEM B:1021
BINDING SITE FOR RESIDUE OSM B 2021
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Protein
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Protein & NOT Variant
Protein & NOT Site
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Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
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Asym.Unit (215 KB)
Header - Asym.Unit
Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
Biol.Unit 2 (105 KB)
Header - Biol.Unit 2
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