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2EF6
Asym. Unit
Info
Asym.Unit (162 KB)
Biol.Unit 1 (155 KB)
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(1)
Title
:
CANAVALIA GLADIATA LECTIN COMPLEXED WITH MAN1-3MAN-OME
Authors
:
F. B. M. B. Moreno, G. A. Bezerra, T. M. Oliveira, E. P. De Souza, B. A. M. Da Rocha, R. G. Benevides, P. Delatorre, B. S. Cavada, W. F. De Azevedo Jr.
Date
:
21 Feb 07 (Deposition) - 30 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Canavalia Gladiata, Lectin, Seeds, Dimannosides, Plant Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. A. Bezerra, T. M. Oliveira, F. B. M. B. Moreno, E. P. De Souza, B. A. M. Da Rocha, R. G. Benevides, P. Delatorre, W. F. De Azevedo Jr. , B. S. Cavada
Structural Analysis Of Canavalia Maritima And Canavalia Gladiata Lectins Complexed With Different Dimannosides: New Insights Into The Understanding Of The Structure-Biological Activity Relationship In Legume Lectins
J. Struct. Biol. V. 160 168 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: METHYL-O3-(ALPHA-D-MANNOSE)-ALPHA-... (MDMa)
2b: METHYL-O3-(ALPHA-D-MANNOSE)-ALPHA-... (MDMb)
2c: METHYL-O3-(ALPHA-D-MANNOSE)-ALPHA-... (MDMc)
2d: METHYL-O3-(ALPHA-D-MANNOSE)-ALPHA-... (MDMd)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
MDM
4
Ligand/Ion
METHYL-O3-(ALPHA-D-MANNOSE)-ALPHA-D-MANNOSE
3
MN
4
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:185 , GLN B:132 , TYR D:12 , ASN D:14 , GLY D:98 , LEU D:99 , TYR D:100 , ALA D:207 , ASP D:208 , GLY D:227 , ARG D:228
BINDING SITE FOR RESIDUE MDM D 1001
02
AC2
SOFTWARE
TYR A:12 , ASN A:14 , GLY A:98 , LEU A:99 , TYR A:100 , ALA A:207 , ASP A:208 , GLY A:227 , ARG A:228 , VAL B:57 , HOH B:1097 , HOH B:1111 , THR D:74 , HOH D:1069
BINDING SITE FOR RESIDUE MDM A 1002
03
AC3
SOFTWARE
GLN A:132 , SER B:185 , TYR C:12 , ASN C:14 , GLY C:98 , LEU C:99 , TYR C:100 , ALA C:207 , ASP C:208 , GLY C:227 , ARG C:228 , HOH C:1080
BINDING SITE FOR RESIDUE MDM C 1003
04
AC4
SOFTWARE
VAL A:57 , LYS A:59 , HOH A:1079 , TYR B:12 , ASN B:14 , GLY B:98 , LEU B:99 , TYR B:100 , ALA B:207 , ASP B:208 , GLY B:227 , ARG B:228 , HOH B:1117 , THR C:74 , SER C:76
BINDING SITE FOR RESIDUE MDM B 1004
05
AC5
SOFTWARE
ASP A:10 , TYR A:12 , ASN A:14 , ASP A:19 , HOH A:1004 , HOH A:1037
BINDING SITE FOR RESIDUE CA A 238
06
AC6
SOFTWARE
GLU A:8 , ASP A:10 , ASP A:19 , HIS A:24 , HOH A:1063 , HOH A:1118
BINDING SITE FOR RESIDUE MN A 239
07
AC7
SOFTWARE
ASP B:10 , TYR B:12 , ASN B:14 , ASP B:19 , HOH B:1013 , HOH B:1063
BINDING SITE FOR RESIDUE CA B 238
08
AC8
SOFTWARE
GLU B:8 , ASP B:10 , ASP B:19 , HIS B:24 , HOH B:1033 , HOH B:1138
BINDING SITE FOR RESIDUE MN B 239
09
AC9
SOFTWARE
ASP C:10 , TYR C:12 , ASN C:14 , ASP C:19 , HOH C:1010 , HOH C:1032
BINDING SITE FOR RESIDUE CA C 238
10
BC1
SOFTWARE
GLU C:8 , ASP C:10 , ASP C:19 , HIS C:24 , HOH C:1078 , HOH C:1079
BINDING SITE FOR RESIDUE MN C 239
11
BC2
SOFTWARE
ASP D:10 , TYR D:12 , ASN D:14 , ASP D:19 , HOH D:1015 , HOH D:1043
BINDING SITE FOR RESIDUE CA D 238
12
BC3
SOFTWARE
GLU D:8 , ASP D:10 , ASP D:19 , HIS D:24 , HOH D:1068
BINDING SITE FOR RESIDUE MN D 239
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2ef6a_ (A:)
1b: SCOP_d2ef6b_ (B:)
1c: SCOP_d2ef6c_ (C:)
1d: SCOP_d2ef6d_ (D:)
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Classes
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
automated matches
(63)
Canavalia gladiata [TaxId: 3824]
(5)
1a
d2ef6a_
A:
1b
d2ef6b_
B:
1c
d2ef6c_
C:
1d
d2ef6d_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2ef6A00 (A:1-237)
1b: CATH_2ef6B00 (B:1-237)
1c: CATH_2ef6C00 (C:1-237)
1d: CATH_2ef6D00 (D:1-237)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Sword bean (Canavalia gladiata)
(5)
1a
2ef6A00
A:1-237
1b
2ef6B00
B:1-237
1c
2ef6C00
C:1-237
1d
2ef6D00
D:1-237
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain C
Chain D
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (162 KB)
Header - Asym.Unit
Biol.Unit 1 (155 KB)
Header - Biol.Unit 1
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