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2EF5
Asym. Unit
Info
Asym.Unit (270 KB)
Biol.Unit 1 (264 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ARGINASE FROM THERMUS THERMOPHILUS
Authors
:
T. S. Kumarevel, P. Karthe, S. Kuramitsu, S. Yokoyama, Riken Structur Genomics/Proteomics Initiative (Rsgi)
Date
:
20 Feb 07 (Deposition) - 14 Apr 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,D,E,F,G
Biol. Unit 1: A,B,D,E,F,G (1x)
Keywords
:
Arginase, Ttha1496, Thermus Thermophilus, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. S. Kumarevel, P. Karthe, S. Kuramitsu, S. Yokoyama
Crystal Structure Of The Arginase From Thermus Thermophilus
To Be Published
[
close entry info
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: GUANIDINE (GAIa)
1b: GUANIDINE (GAIb)
1c: GUANIDINE (GAIc)
1d: GUANIDINE (GAId)
1e: GUANIDINE (GAIe)
1f: GUANIDINE (GAIf)
2a: LYSINE (LYSa)
2b: LYSINE (LYSb)
2c: LYSINE (LYSc)
2d: LYSINE (LYSd)
2e: LYSINE (LYSe)
2f: LYSINE (LYSf)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
3e: MANGANESE (II) ION (MNe)
3f: MANGANESE (II) ION (MNf)
3g: MANGANESE (II) ION (MNg)
3h: MANGANESE (II) ION (MNh)
3i: MANGANESE (II) ION (MNi)
3j: MANGANESE (II) ION (MNj)
3k: MANGANESE (II) ION (MNk)
3l: MANGANESE (II) ION (MNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAI
6
Ligand/Ion
GUANIDINE
2
LYS
6
Mod. Amino Acid
LYSINE
3
MN
12
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:119 , HIS A:121 , ASP A:218 , ASP A:220 , MN A:1102
BINDING SITE FOR RESIDUE MN A 1101
02
AC2
SOFTWARE
HIS A:97 , ASP A:119 , ASP A:123 , ASP A:218 , MN A:1101
BINDING SITE FOR RESIDUE MN A 1102
03
AC3
SOFTWARE
ASP B:119 , HIS B:121 , ASP B:218 , ASP B:220 , MN B:1602
BINDING SITE FOR RESIDUE MN B 1601
04
AC4
SOFTWARE
HIS B:97 , ASP B:119 , ASP B:123 , ASP B:218 , MN B:1601
BINDING SITE FOR RESIDUE MN B 1602
05
AC5
SOFTWARE
ASP D:119 , HIS D:121 , ASP D:218 , ASP D:220 , MN D:1202
BINDING SITE FOR RESIDUE MN D 1201
06
AC6
SOFTWARE
HIS D:97 , ASP D:119 , ASP D:123 , ASP D:218 , MN D:1201
BINDING SITE FOR RESIDUE MN D 1202
07
AC7
SOFTWARE
ASP E:119 , HIS E:121 , ASP E:218 , ASP E:220 , MN E:1302
BINDING SITE FOR RESIDUE MN E 1301
08
AC8
SOFTWARE
HIS E:97 , ASP E:119 , ASP E:123 , ASP E:218 , MN E:1301
BINDING SITE FOR RESIDUE MN E 1302
09
AC9
SOFTWARE
ASP F:119 , HIS F:121 , ASP F:218 , ASP F:220 , MN F:1402
BINDING SITE FOR RESIDUE MN F 1401
10
BC1
SOFTWARE
HIS F:97 , ASP F:119 , ASP F:123 , ASP F:218 , MN F:1401
BINDING SITE FOR RESIDUE MN F 1402
11
BC2
SOFTWARE
ASP G:119 , HIS G:121 , ASP G:218 , ASP G:220 , MN G:1502
BINDING SITE FOR RESIDUE MN G 1501
12
BC3
SOFTWARE
HIS G:97 , ASP G:119 , ASP G:123 , ASP G:218 , MN G:1501
BINDING SITE FOR RESIDUE MN G 1502
13
BC4
SOFTWARE
GLU A:248 , HIS D:190 , ASP D:193 , HOH D:3015 , HOH D:3058
BINDING SITE FOR RESIDUE GAI A 1001
14
BC5
SOFTWARE
ASP A:193 , HOH A:3051 , GLU F:248
BINDING SITE FOR RESIDUE GAI A 1004
15
BC6
SOFTWARE
PRO A:10 , ASP A:21 , MET A:22 , SER A:25 , HOH A:3009 , HOH A:3076 , ASP E:21 , MET E:22 , LYS E:3003 , HOH E:3121
BINDING SITE FOR RESIDUE LYS A 3001
16
BC7
SOFTWARE
GLU B:248 , ASP E:193 , HOH E:3007
BINDING SITE FOR RESIDUE GAI B 1006
17
BC8
SOFTWARE
ASP B:21 , SER B:25 , HOH B:3013 , ASP D:21 , LYS D:3002
BINDING SITE FOR RESIDUE LYS B 3006
18
BC9
SOFTWARE
GLU D:248 , ASP F:193
BINDING SITE FOR RESIDUE GAI D 1002
19
CC1
SOFTWARE
ASP B:21 , MET B:22 , LYS B:3006 , PRO D:10 , ASP D:21 , SER D:25
BINDING SITE FOR RESIDUE LYS D 3002
20
CC2
SOFTWARE
GLU E:248 , HOH E:3005 , MET G:189 , HIS G:190 , ASP G:193
BINDING SITE FOR RESIDUE GAI E 1003
21
CC3
SOFTWARE
ASP A:21 , LYS A:3001 , HOH A:3076 , PRO E:10 , ASP E:21 , MET E:22 , SER E:25 , HOH E:3058 , HOH E:3084 , HOH E:3121
BINDING SITE FOR RESIDUE LYS E 3003
22
CC4
SOFTWARE
PRO F:10 , ASP F:21 , MET F:22 , SER F:25 , HOH F:3097 , ASP G:21 , MET G:22 , LYS G:3005
BINDING SITE FOR RESIDUE LYS F 3004
23
CC5
SOFTWARE
HIS B:190 , ASP B:193 , GLU G:248
BINDING SITE FOR RESIDUE GAI G 1005
24
CC6
SOFTWARE
LYS F:3004 , HOH F:3097 , PRO G:10 , ASP G:21 , MET G:22 , SER G:25 , HOH G:3038 , HOH G:3062
BINDING SITE FOR RESIDUE LYS G 3005
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2ef5a_ (A:)
1b: SCOP_d2ef5b_ (B:)
1c: SCOP_d2ef5d_ (D:)
1d: SCOP_d2ef5e_ (E:)
1e: SCOP_d2ef5f_ (F:)
1f: SCOP_d2ef5g_ (G:)
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Classes
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Thermus thermophilus [TaxId: 274]
(2)
1a
d2ef5a_
A:
1b
d2ef5b_
B:
1c
d2ef5d_
D:
1d
d2ef5e_
E:
1e
d2ef5f_
F:
1f
d2ef5g_
G:
[
close SCOP info
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2ef5A00 (A:2-291)
1b: CATH_2ef5B00 (B:2-291)
1c: CATH_2ef5D00 (D:2-291)
1d: CATH_2ef5E00 (E:2-291)
1e: CATH_2ef5F00 (F:2-291)
1f: CATH_2ef5G00 (G:2-291)
View:
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Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.10, no name defined]
(63)
Thermus thermophilus. Organism_taxid: 274.
(2)
1a
2ef5A00
A:2-291
1b
2ef5B00
B:2-291
1c
2ef5D00
D:2-291
1d
2ef5E00
E:2-291
1e
2ef5F00
F:2-291
1f
2ef5G00
G:2-291
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain E
Chain F
Chain G
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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