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Asym. Unit
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Asym.Unit (532 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF SECOND PDZ DOMAIN OF PDZ DOMAIN CONTAINING PROTEIN 1
Authors
:
T. N. Niraula, T. Tomizawa, K. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
15 Feb 07 (Deposition) - 26 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Pdz Domain, Regulatory Factor, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. N. Niraula, T. Tomizawa, K. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of Second Pdz Domain Of Pdz Domain Containing Protein 1
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 2)
Info
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1: PDZ (-|A:10-91|A:100-106|-)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
NHRF3_HUMAN
9-90
134-215
243-323
378-458
2
-
A:10-91
A:100-106
-
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Exons
(4, 4)
Info
All Exons
Exon 1.5 (A:1-30 (gaps))
Exon 1.6 (A:30-75)
Exon 1.7 (A:76-104 (gaps))
Exon 1.8 (A:105-106)
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All Exon Boundaries
1: Boundary 1.4b/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000344770
3
ENSE00001411267
chr1:
145743263-145743333
71
NHRF3_HUMAN
-
0
0
-
-
1.4b
ENST00000344770
4b
ENSE00001372163
chr1:
145747042-145747253
212
NHRF3_HUMAN
1-70
70
0
-
-
1.5
ENST00000344770
5
ENSE00001759427
chr1:
145748338-145748587
250
NHRF3_HUMAN
71-154
84
1
A:1-30 (gaps)
49
1.6
ENST00000344770
6
ENSE00001710717
chr1:
145752428-145752564
137
NHRF3_HUMAN
154-199
46
1
A:30-75
46
1.7
ENST00000344770
7
ENSE00002188888
chr1:
145753955-145754150
196
NHRF3_HUMAN
200-265
66
1
A:76-104 (gaps)
52
1.8
ENST00000344770
8
ENSE00001787521
chr1:
145756417-145756613
197
NHRF3_HUMAN
265-330
66
1
A:105-106
2
1.9a
ENST00000344770
9a
ENSE00001784849
chr1:
145761178-145761402
225
NHRF3_HUMAN
331-405
75
0
-
-
1.10a
ENST00000344770
10a
ENSE00001706980
chr1:
145762039-145762329
291
NHRF3_HUMAN
406-502
97
0
-
-
1.12d
ENST00000344770
12d
ENSE00001365469
chr1:
145763570-145764074
505
NHRF3_HUMAN
503-519
17
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2eeia_ (A:)
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Class
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All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Human (Homo sapiens) [TaxId: 9606]
(71)
1a
d2eeia_
A:
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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