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Asym. Unit
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Asym.Unit (470 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM HUMAN FERM AND PDZ DOMAIN CONTAINING 1
Authors
:
K. Seimiya, C. Kurosaki, M. Yoshida, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
15 Feb 07 (Deposition) - 21 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Cytoskeletal-Associated Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Seimiya, C. Kurosaki, M. Yoshida, F. Hayashi, S. Yokoyama
Solution Structure Of The Pdz Domain From Human Ferm And Pdz Domain Containing 1
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:11-89)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
FRPD1_HUMAN
57-135
1
A:11-89
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Exons
(6, 6)
Info
All Exons
Exon 1.2 (A:1-7)
Exon 1.3 (A:8-41)
Exon 1.4 (A:41-75)
Exon 1.5 (A:75-90)
Exon 1.6 (A:91-95)
Exon 1.7 (A:96-96)
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1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000377765
1
ENSE00001475061
chr9:
37650997-37651091
95
FRPD1_HUMAN
-
0
0
-
-
1.2
ENST00000377765
2
ENSE00001475060
chr9:
37692635-37692739
105
FRPD1_HUMAN
1-34
34
1
A:1-7
7
1.3
ENST00000377765
3
ENSE00000982365
chr9:
37707413-37707570
158
FRPD1_HUMAN
34-87
54
1
A:8-41
34
1.4
ENST00000377765
4
ENSE00000982366
chr9:
37708396-37708498
103
FRPD1_HUMAN
87-121
35
1
A:41-75
35
1.5
ENST00000377765
5
ENSE00000982367
chr9:
37711347-37711392
46
FRPD1_HUMAN
121-136
16
1
A:75-90
16
1.6
ENST00000377765
6
ENSE00000982368
chr9:
37719066-37719173
108
FRPD1_HUMAN
137-172
36
1
A:91-95
5
1.7
ENST00000377765
7
ENSE00000982369
chr9:
37724222-37724317
96
FRPD1_HUMAN
173-204
32
1
A:96-96
1
1.8
ENST00000377765
8
ENSE00000982370
chr9:
37729725-37729850
126
FRPD1_HUMAN
205-246
42
0
-
-
1.9
ENST00000377765
9
ENSE00000982371
chr9:
37730981-37731100
120
FRPD1_HUMAN
247-286
40
0
-
-
1.10
ENST00000377765
10
ENSE00000982372
chr9:
37732301-37732437
137
FRPD1_HUMAN
287-332
46
0
-
-
1.11
ENST00000377765
11
ENSE00000982373
chr9:
37733470-37733596
127
FRPD1_HUMAN
332-374
43
0
-
-
1.12
ENST00000377765
12
ENSE00000982374
chr9:
37733727-37733822
96
FRPD1_HUMAN
375-406
32
0
-
-
1.13
ENST00000377765
13
ENSE00000982375
chr9:
37735549-37735731
183
FRPD1_HUMAN
407-467
61
0
-
-
1.14
ENST00000377765
14
ENSE00001048543
chr9:
37737093-37737240
148
FRPD1_HUMAN
468-517
50
0
-
-
1.15
ENST00000377765
15
ENSE00001048539
chr9:
37740075-37740881
807
FRPD1_HUMAN
517-786
270
0
-
-
1.16
ENST00000377765
16
ENSE00001048542
chr9:
37744386-37746901
2516
FRPD1_HUMAN
786-1578
793
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2edva_ (A:)
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Class
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All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Human (Homo sapiens) [TaxId: 9606]
(71)
1a
d2edva_
A:
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CATH Domains
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Asymmetric Unit 1
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