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Asym. Unit
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Asym.Unit (502 KB)
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Models
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Title
:
SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM HUMAN SHROOM FAMILY MEMBER 4
Authors
:
H. Endo, M. Yoshida, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
14 Feb 07 (Deposition) - 14 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Apx/Shroom Family Member, Kiaa1202 Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Endo, M. Yoshida, F. Hayashi, S. Yokoyama
Solution Structure Of The Pdz Domain From Human Shroom Family Member 4
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
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1: PDZ (A:12-94)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
SHRM4_HUMAN
10-92
1
A:12-94
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Exons
(3, 3)
Info
All Exons
Exon 1.1b (A:3-41)
Exon 1.2 (A:42-92)
Exon 1.5 (A:92-100 (gaps))
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1: Boundary -/1.1b
2: Boundary 1.1b/1.2
3: Boundary 1.2/1.5
4: Boundary 1.5/1.6
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000376020
1b
ENSE00002042413
X:50557044-50556902
143
SHRM4_HUMAN
1-39
39
1
A:3-41
39
1.2
ENST00000376020
2
ENSE00001038490
X:50438937-50438786
152
SHRM4_HUMAN
40-90
51
1
A:42-92
51
1.5
ENST00000376020
5
ENSE00001750094
X:50381308-50381174
135
SHRM4_HUMAN
90-135
46
1
A:92-100 (gaps)
42
1.6
ENST00000376020
6
ENSE00001038494
X:50378668-50376178
2491
SHRM4_HUMAN
135-965
831
0
-
-
1.7
ENST00000376020
7
ENSE00001325221
X:50370675-50370614
62
SHRM4_HUMAN
966-986
21
0
-
-
1.8
ENST00000376020
8
ENSE00001302283
X:50351184-50350381
804
SHRM4_HUMAN
986-1254
269
0
-
-
1.9
ENST00000376020
9
ENSE00001038487
X:50345813-50345633
181
SHRM4_HUMAN
1254-1314
61
0
-
-
1.10
ENST00000376020
10
ENSE00001038485
X:50341535-50341266
270
SHRM4_HUMAN
1315-1404
90
0
-
-
1.11c
ENST00000376020
11c
ENSE00001525342
X:50339964-50334647
5318
SHRM4_HUMAN
1405-1493
89
0
-
-
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SCOP Domains
(1, 1)
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1a: SCOP_d2edpa_ (A:)
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Class
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All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Human (Homo sapiens) [TaxId: 9606]
(71)
1a
d2edpa_
A:
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CATH Domains
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