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2EBR
Asym. Unit
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Asym.Unit (216 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE FOURTH ZF-RANBP DOMAIN FROM HUMAN NUCLEAR PORE COMPLEX PROTEIN NUP153
Authors
:
H. P. Zhang, T. Nagashima, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
09 Feb 07 (Deposition) - 14 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Zf-Ranbp Domain, Nuclear Pore Complex Protein, Nucleoporin Nup153, 153 Kda Nucleoporin, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transport Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. P. Zhang, T. Nagashima, F. Hayashi, S. Yokoyama
Solution Structure Of The Fourth Zf-Ranbp Domain From Human Nuclear Pore Complex Protein Nup153
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:14 , CYS A:17 , CYS A:28 , CYS A:31
BINDING SITE FOR RESIDUE ZN A 201
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ZF_RANBP2_2 (-|-|-|A:8-37)
2: ZF_RANBP2_1 (-|-|-|A:12-31)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_RANBP2_2
PS50199
Zinc finger RanBP2 type profile.
NU153_HUMAN
657-687
722-751
793-822
851-880
1
-
-
-
A:8-37
2
ZF_RANBP2_1
PS01358
Zinc finger RanBP2-type signature.
NU153_HUMAN
662-681
726-745
797-816
855-874
1
-
-
-
A:12-31
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Exons
(3, 3)
Info
All Exons
Exon 1.17 (A:1-1)
Exon 1.18 (A:1-44 (gaps))
Exon 1.19 (A:44-47)
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All Exon Boundaries
1: Boundary 1.16/1.17
2: Boundary 1.17/1.18
3: Boundary 1.18/1.19
4: Boundary 1.19/1.20
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000262077
1b
ENSE00001927997
chr6:
17706618-17706508
111
NU153_HUMAN
1-37
37
0
-
-
1.2
ENST00000262077
2
ENSE00000848155
chr6:
17688849-17688627
223
NU153_HUMAN
38-112
75
0
-
-
1.3
ENST00000262077
3
ENSE00000848154
chr6:
17676001-17675753
249
NU153_HUMAN
112-195
84
0
-
-
1.4
ENST00000262077
4
ENSE00000848153
chr6:
17675599-17675460
140
NU153_HUMAN
195-241
47
0
-
-
1.5
ENST00000262077
5
ENSE00000848152
chr6:
17675264-17675136
129
NU153_HUMAN
242-284
43
0
-
-
1.6
ENST00000262077
6
ENSE00000848151
chr6:
17669777-17669661
117
NU153_HUMAN
285-323
39
0
-
-
1.7
ENST00000262077
7
ENSE00000848150
chr6:
17669568-17669524
45
NU153_HUMAN
324-338
15
0
-
-
1.8
ENST00000262077
8
ENSE00000848149
chr6:
17669259-17669206
54
NU153_HUMAN
339-356
18
0
-
-
1.9
ENST00000262077
9
ENSE00000848148
chr6:
17665616-17665470
147
NU153_HUMAN
357-405
49
0
-
-
1.10
ENST00000262077
10
ENSE00000848147
chr6:
17662301-17662249
53
NU153_HUMAN
406-423
18
0
-
-
1.11
ENST00000262077
11
ENSE00000848146
chr6:
17662010-17661884
127
NU153_HUMAN
423-465
43
0
-
-
1.13
ENST00000262077
13
ENSE00000848145
chr6:
17649531-17649394
138
NU153_HUMAN
466-511
46
0
-
-
1.14
ENST00000262077
14
ENSE00000848144
chr6:
17648136-17648038
99
NU153_HUMAN
512-544
33
0
-
-
1.15
ENST00000262077
15
ENSE00000848143
chr6:
17646385-17646298
88
NU153_HUMAN
545-574
30
0
-
-
1.16
ENST00000262077
16
ENSE00000848142
chr6:
17640295-17640170
126
NU153_HUMAN
574-616
43
0
-
-
1.17
ENST00000262077
17
ENSE00000848141
chr6:
17638001-17637384
618
NU153_HUMAN
616-822
207
1
A:1-1
1
1.18
ENST00000262077
18
ENSE00000848140
chr6:
17633075-17632881
195
NU153_HUMAN
822-887
66
1
A:1-44 (gaps)
66
1.19
ENST00000262077
19
ENSE00000848139
chr6:
17629770-17628886
885
NU153_HUMAN
887-1182
296
1
A:44-47
4
1.20
ENST00000262077
20
ENSE00000848138
chr6:
17626395-17626039
357
NU153_HUMAN
1182-1301
120
0
-
-
1.21
ENST00000262077
21
ENSE00000848137
chr6:
17625064-17624792
273
NU153_HUMAN
1301-1392
92
0
-
-
1.22
ENST00000262077
22
ENSE00000848136
chr6:
17616926-17616758
169
NU153_HUMAN
1392-1448
57
0
-
-
1.23
ENST00000262077
23
ENSE00000848135
chr6:
17616412-17615269
1144
NU153_HUMAN
1448-1475
28
0
-
-
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