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2EBA
Biol. Unit 1
Info
Asym.Unit (503 KB)
Biol.Unit 1 (251 KB)
Biol.Unit 2 (250 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PUTATIVE GLUTARYL-COA DEHYDROGENASE FROM THERMUS THERMOPHILUS
Authors
:
T. S. Kumarevel, P. Karthe, S. Kuramitsu, S. Yokoyama, Riken Structur Genomics/Proteomics Initiative (Rsgi)
Date
:
07 Feb 07 (Deposition) - 01 Apr 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.21
Chains
:
Asym. Unit : A,C,D,E,F,G,H,I
Biol. Unit 1: A,C,D,E (1x)
Biol. Unit 2: F,G,H,I (1x)
Keywords
:
Glutaryl-Coa Dehydrogenase, Thermus Thermophilius, Fad, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Oxidoreductase
(Keyword Search:
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Reference
:
T. S. Kumarevel, P. Karthe, S. Kuramitsu, S. Yokoyama
Crystal Structure Of The Putative Glutaryl-Coa Dehydrogenas From Thermus Thermophilus
To Be Published
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
1e: FLAVIN-ADENINE DINUCLEOTIDE (FADe)
1f: FLAVIN-ADENINE DINUCLEOTIDE (FADf)
1g: FLAVIN-ADENINE DINUCLEOTIDE (FADg)
1h: FLAVIN-ADENINE DINUCLEOTIDE (FADh)
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No.
Name
Count
Type
Full Name
1
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:129 , LEU A:131 , THR A:132 , GLY A:136 , GLY A:137 , SER A:138 , TRP A:163 , THR A:165 , LEU A:207 , THR A:360 , THR A:363 , TYR A:364 , GLU A:365 , THR A:367 , ASP A:369 , PHE A:385 , HOH A:1009 , HOH A:1051 , HOH A:1054 , HOH A:1068 , GLN C:281 , ARG D:270 , THR D:272 , PHE D:273 , LEU D:277 , LYS D:280 , ASP D:338 , ILE D:339 , GLY D:342 , HOH D:3003 , HOH D:3009
BINDING SITE FOR RESIDUE FAD A 1001
2
AC2
SOFTWARE
GLN A:281 , PHE C:129 , LEU C:131 , THR C:132 , GLY C:136 , GLY C:137 , SER C:138 , TRP C:163 , THR C:165 , LEU C:207 , THR C:360 , THR C:363 , TYR C:364 , GLU C:365 , THR C:367 , ASP C:369 , PHE C:385 , HOH C:2003 , HOH C:2029 , HOH C:2064 , ARG E:270 , THR E:272 , PHE E:273 , LEU E:277 , LYS E:280 , ASP E:338 , ILE E:339 , GLY E:342 , HOH E:4003
BINDING SITE FOR RESIDUE FAD C 2001
3
AC3
SOFTWARE
ARG A:270 , THR A:272 , LEU A:277 , LYS A:280 , ASP A:338 , ILE A:339 , GLY A:342 , HOH A:1044 , HOH A:1048 , PHE D:129 , LEU D:131 , THR D:132 , GLY D:136 , GLY D:137 , SER D:138 , TRP D:163 , THR D:165 , LEU D:207 , THR D:360 , THR D:363 , TYR D:364 , GLU D:365 , THR D:367 , ASP D:369 , PHE D:385 , HOH D:3004 , HOH D:3013 , HOH D:3063 , GLN E:281
BINDING SITE FOR RESIDUE FAD D 3001
4
AC4
SOFTWARE
ARG C:270 , THR C:272 , PHE C:273 , LEU C:277 , LYS C:280 , ASP C:338 , ILE C:339 , GLY C:342 , ILE C:345 , HOH C:2042 , HOH C:2043 , HOH C:2048 , GLN D:281 , PHE E:129 , LEU E:131 , THR E:132 , GLY E:136 , GLY E:137 , SER E:138 , TRP E:163 , THR E:165 , LEU E:207 , THR E:360 , THR E:363 , TYR E:364 , GLU E:365 , THR E:367 , ASP E:369 , PHE E:385 , HOH E:4010
BINDING SITE FOR RESIDUE FAD E 4001
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2ebaa2 (A:234-385)
1b: SCOP_d2ebac2 (C:234-385)
1c: SCOP_d2ebad2 (D:234-385)
1d: SCOP_d2ebae2 (E:234-385)
1e: SCOP_d2ebaf2 (F:234-385)
1f: SCOP_d2ebag2 (G:234-385)
1g: SCOP_d2ebah2 (H:234-385)
1h: SCOP_d2ebai2 (I:234-385)
2a: SCOP_d2ebaa1 (A:1-233)
2b: SCOP_d2ebac1 (C:1-233)
2c: SCOP_d2ebad1 (D:1-233)
2d: SCOP_d2ebae1 (E:1-233)
2e: SCOP_d2ebaf1 (F:1-233)
2f: SCOP_d2ebag1 (G:1-233)
2g: SCOP_d2ebah1 (H:1-233)
2h: SCOP_d2ebai1 (I:1-233)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
automated matches
(29)
Protein domain
:
automated matches
(29)
Thermus thermophilus HB8 [TaxId: 300852]
(1)
1a
d2ebaa2
A:234-385
1b
d2ebac2
C:234-385
1c
d2ebad2
D:234-385
1d
d2ebae2
E:234-385
1e
d2ebaf2
F:234-385
1f
d2ebag2
G:234-385
1g
d2ebah2
H:234-385
1h
d2ebai2
I:234-385
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Thermus thermophilus HB8 [TaxId: 300852]
(1)
2a
d2ebaa1
A:1-233
2b
d2ebac1
C:1-233
2c
d2ebad1
D:1-233
2d
d2ebae1
E:1-233
2e
d2ebaf1
F:1-233
2f
d2ebag1
G:1-233
2g
d2ebah1
H:1-233
2h
d2ebai1
I:1-233
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (503 KB)
Header - Asym.Unit
Biol.Unit 1 (251 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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