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2EBA
Asym. Unit
Info
Asym.Unit (503 KB)
Biol.Unit 1 (251 KB)
Biol.Unit 2 (250 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PUTATIVE GLUTARYL-COA DEHYDROGENASE FROM THERMUS THERMOPHILUS
Authors
:
T. S. Kumarevel, P. Karthe, S. Kuramitsu, S. Yokoyama, Riken Structur Genomics/Proteomics Initiative (Rsgi)
Date
:
07 Feb 07 (Deposition) - 01 Apr 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.21
Chains
:
Asym. Unit : A,C,D,E,F,G,H,I
Biol. Unit 1: A,C,D,E (1x)
Biol. Unit 2: F,G,H,I (1x)
Keywords
:
Glutaryl-Coa Dehydrogenase, Thermus Thermophilius, Fad, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Oxidoreductase
(Keyword Search:
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Reference
:
T. S. Kumarevel, P. Karthe, S. Kuramitsu, S. Yokoyama
Crystal Structure Of The Putative Glutaryl-Coa Dehydrogenas From Thermus Thermophilus
To Be Published
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
1e: FLAVIN-ADENINE DINUCLEOTIDE (FADe)
1f: FLAVIN-ADENINE DINUCLEOTIDE (FADf)
1g: FLAVIN-ADENINE DINUCLEOTIDE (FADg)
1h: FLAVIN-ADENINE DINUCLEOTIDE (FADh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
8
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:129 , LEU A:131 , THR A:132 , GLY A:136 , GLY A:137 , SER A:138 , TRP A:163 , THR A:165 , LEU A:207 , THR A:360 , THR A:363 , TYR A:364 , GLU A:365 , THR A:367 , ASP A:369 , PHE A:385 , HOH A:1009 , HOH A:1051 , HOH A:1054 , HOH A:1068 , GLN C:281 , ARG D:270 , THR D:272 , PHE D:273 , LEU D:277 , LYS D:280 , ASP D:338 , ILE D:339 , GLY D:342 , HOH D:3003 , HOH D:3009
BINDING SITE FOR RESIDUE FAD A 1001
2
AC2
SOFTWARE
GLN A:281 , PHE C:129 , LEU C:131 , THR C:132 , GLY C:136 , GLY C:137 , SER C:138 , TRP C:163 , THR C:165 , LEU C:207 , THR C:360 , THR C:363 , TYR C:364 , GLU C:365 , THR C:367 , ASP C:369 , PHE C:385 , HOH C:2003 , HOH C:2029 , HOH C:2064 , ARG E:270 , THR E:272 , PHE E:273 , LEU E:277 , LYS E:280 , ASP E:338 , ILE E:339 , GLY E:342 , HOH E:4003
BINDING SITE FOR RESIDUE FAD C 2001
3
AC3
SOFTWARE
ARG A:270 , THR A:272 , LEU A:277 , LYS A:280 , ASP A:338 , ILE A:339 , GLY A:342 , HOH A:1044 , HOH A:1048 , PHE D:129 , LEU D:131 , THR D:132 , GLY D:136 , GLY D:137 , SER D:138 , TRP D:163 , THR D:165 , LEU D:207 , THR D:360 , THR D:363 , TYR D:364 , GLU D:365 , THR D:367 , ASP D:369 , PHE D:385 , HOH D:3004 , HOH D:3013 , HOH D:3063 , GLN E:281
BINDING SITE FOR RESIDUE FAD D 3001
4
AC4
SOFTWARE
ARG C:270 , THR C:272 , PHE C:273 , LEU C:277 , LYS C:280 , ASP C:338 , ILE C:339 , GLY C:342 , ILE C:345 , HOH C:2042 , HOH C:2043 , HOH C:2048 , GLN D:281 , PHE E:129 , LEU E:131 , THR E:132 , GLY E:136 , GLY E:137 , SER E:138 , TRP E:163 , THR E:165 , LEU E:207 , THR E:360 , THR E:363 , TYR E:364 , GLU E:365 , THR E:367 , ASP E:369 , PHE E:385 , HOH E:4010
BINDING SITE FOR RESIDUE FAD E 4001
5
AC5
SOFTWARE
PHE F:129 , LEU F:131 , THR F:132 , GLY F:136 , GLY F:137 , SER F:138 , TRP F:163 , THR F:165 , LEU F:207 , THR F:360 , THR F:363 , TYR F:364 , THR F:367 , ASP F:369 , PHE F:385 , HOH F:5004 , HOH F:5049 , ARG G:270 , THR G:272 , PHE G:273 , LEU G:277 , LYS G:280 , ASP G:338 , ILE G:339 , GLY G:342 , HOH G:6002 , HOH G:6006 , GLN I:281
BINDING SITE FOR RESIDUE FAD F 5001
6
AC6
SOFTWARE
ARG F:270 , THR F:272 , LYS F:280 , ASP F:338 , ILE F:339 , GLY F:342 , ILE F:345 , HOH F:5036 , HOH F:5037 , HOH F:5042 , PHE G:129 , LEU G:131 , THR G:132 , GLY G:136 , GLY G:137 , SER G:138 , TRP G:163 , THR G:165 , LEU G:207 , THR G:360 , THR G:363 , TYR G:364 , GLU G:365 , THR G:367 , ASP G:369 , PHE G:385 , HOH G:6047 , HOH G:6056 , HOH G:6074 , GLN H:281
BINDING SITE FOR RESIDUE FAD G 6001
7
AC7
SOFTWARE
GLN G:281 , PHE H:129 , LEU H:131 , THR H:132 , GLY H:136 , GLY H:137 , SER H:138 , TRP H:163 , THR H:165 , THR H:360 , THR H:363 , TYR H:364 , GLU H:365 , THR H:367 , ASP H:369 , PHE H:385 , HOH H:7006 , HOH H:7051 , HOH H:7060 , HOH H:7066 , ARG I:270 , THR I:272 , LEU I:277 , LYS I:280 , ASP I:338 , ILE I:339 , GLY I:342 , HOH I:8008 , HOH I:8010 , HOH I:8014
BINDING SITE FOR RESIDUE FAD H 7001
8
AC8
SOFTWARE
GLN F:281 , ARG H:270 , THR H:272 , PHE H:273 , LEU H:277 , LYS H:280 , ASP H:338 , ILE H:339 , GLY H:342 , HOH H:7043 , HOH H:7047 , PHE I:129 , LEU I:131 , THR I:132 , GLY I:136 , GLY I:137 , SER I:138 , TRP I:163 , THR I:165 , LEU I:207 , THR I:360 , THR I:363 , TYR I:364 , THR I:367 , ASP I:369 , PHE I:385 , HOH I:8007 , HOH I:8018 , HOH I:8061 , HOH I:8071
BINDING SITE FOR RESIDUE FAD I 8001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2ebaa2 (A:234-385)
1b: SCOP_d2ebac2 (C:234-385)
1c: SCOP_d2ebad2 (D:234-385)
1d: SCOP_d2ebae2 (E:234-385)
1e: SCOP_d2ebaf2 (F:234-385)
1f: SCOP_d2ebag2 (G:234-385)
1g: SCOP_d2ebah2 (H:234-385)
1h: SCOP_d2ebai2 (I:234-385)
2a: SCOP_d2ebaa1 (A:1-233)
2b: SCOP_d2ebac1 (C:1-233)
2c: SCOP_d2ebad1 (D:1-233)
2d: SCOP_d2ebae1 (E:1-233)
2e: SCOP_d2ebaf1 (F:1-233)
2f: SCOP_d2ebag1 (G:1-233)
2g: SCOP_d2ebah1 (H:1-233)
2h: SCOP_d2ebai1 (I:1-233)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
automated matches
(29)
Protein domain
:
automated matches
(29)
Thermus thermophilus HB8 [TaxId: 300852]
(1)
1a
d2ebaa2
A:234-385
1b
d2ebac2
C:234-385
1c
d2ebad2
D:234-385
1d
d2ebae2
E:234-385
1e
d2ebaf2
F:234-385
1f
d2ebag2
G:234-385
1g
d2ebah2
H:234-385
1h
d2ebai2
I:234-385
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Thermus thermophilus HB8 [TaxId: 300852]
(1)
2a
d2ebaa1
A:1-233
2b
d2ebac1
C:1-233
2c
d2ebad1
D:1-233
2d
d2ebae1
E:1-233
2e
d2ebaf1
F:1-233
2f
d2ebag1
G:1-233
2g
d2ebah1
H:1-233
2h
d2ebai1
I:1-233
[
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CATH Domains
(0, 0)
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Pfam Domains
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