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2EB1
Biol. Unit 1
Info
Asym.Unit (95 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C-TERMINAL RNASE III DOMAIN OF HUMAN DICER
Authors
:
D. Takeshita, S. Zenno, W. C. Lee, K. Nagata, K. Saigo, M. Tanokura
Date
:
05 Feb 07 (Deposition) - 06 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B (2x)
Keywords
:
Rna-Binding, Nuclease, Hydrolase, Endonuclease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Takeshita, S. Zenno, W. C. Lee, K. Nagata, K. Saigo, M. Tanokura
Homodimeric Structure And Double-Stranded Rna Cleavage Activity Of The C-Terminal Rnase Iii Domain Of Human Dicer
J. Mol. Biol. V. 374 106 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU C:47 , ASP C:152 , GLU C:155 , HOH C:508 , HOH C:529 , HOH C:571
BINDING SITE FOR RESIDUE MG C 501
2
AC2
SOFTWARE
GLU A:47 , ASP A:152 , GLU A:155 , HOH A:507 , HOH A:514 , HOH A:562
BINDING SITE FOR RESIDUE MG A 502
3
AC4
SOFTWARE
ASP A:55 , HOH A:508 , HOH A:559 , ASP C:51 , ASP C:55 , HOH C:535 , HOH C:572
BINDING SITE FOR RESIDUE MG C 504
4
AC5
SOFTWARE
ASP A:51 , HOH A:526 , HOH A:533 , HOH A:553 , HOH A:563
BINDING SITE FOR RESIDUE MG A 505
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SAPs(SNPs)/Variants
(10, 20)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_067091 (E47K, chain A/C, )
02: VAR_067092 (D51E, chain A/C, )
03: VAR_067093 (D51G, chain A/C, )
04: VAR_067094 (D51N, chain A/C, )
05: VAR_067095 (D152H, chain A/C, )
06: VAR_067096 (D152N, chain A/C, )
07: VAR_067097 (D152Y, chain A/C, )
08: VAR_067098 (E155G, chain A/C, )
09: VAR_067099 (E155K, chain A/C, )
10: VAR_067100 (E155Q, chain A/C, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_067091
E
1705
K
DICER_HUMAN
Unclassified
---
A/C
E
47
K
02
UniProt
VAR_067092
D
1709
E
DICER_HUMAN
Unclassified
---
A/C
D
51
E
03
UniProt
VAR_067093
D
1709
G
DICER_HUMAN
Unclassified
---
A/C
D
51
G
04
UniProt
VAR_067094
D
1709
N
DICER_HUMAN
Unclassified
---
A/C
D
51
N
05
UniProt
VAR_067095
D
1810
H
DICER_HUMAN
Unclassified
---
A/C
D
152
H
06
UniProt
VAR_067096
D
1810
N
DICER_HUMAN
Unclassified
---
A/C
D
152
N
07
UniProt
VAR_067097
D
1810
Y
DICER_HUMAN
Unclassified
---
A/C
D
152
Y
08
UniProt
VAR_067098
E
1813
G
DICER_HUMAN
Unclassified
---
A/C
E
155
G
09
UniProt
VAR_067099
E
1813
K
DICER_HUMAN
Unclassified
---
A/C
E
155
K
10
UniProt
VAR_067100
E
1813
Q
DICER_HUMAN
Unclassified
---
A/C
E
155
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: RNASE_3_2 (A:8-166,C:8-166|-)
2: RNASE_3_1 (A:44-52,C:44-52)
3: DS_RBD (A:191-192)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_3_2
PS50142
Ribonuclease III family domain profile.
DICER_HUMAN
1666-1824
1283-1372
2
A:8-166
-
C:8-166
-
2
RNASE_3_1
PS00517
Ribonuclease III family signature.
DICER_HUMAN
1702-1710
2
A:44-52
-
C:44-52
3
DS_RBD
PS50137
Double stranded RNA-binding domain (dsRBD) profile.
DICER_HUMAN
1849-1914
1
A:191-192
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (95 KB)
Header - Asym.Unit
Biol.Unit 1 (61 KB)
Header - Biol.Unit 1
Biol.Unit 2 (60 KB)
Header - Biol.Unit 2
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