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Getting 'Biological Unit' information from database.
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2EB1
Asym. Unit
Info
Asym.Unit (95 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C-TERMINAL RNASE III DOMAIN OF HUMAN DICER
Authors
:
D. Takeshita, S. Zenno, W. C. Lee, K. Nagata, K. Saigo, M. Tanokura
Date
:
05 Feb 07 (Deposition) - 06 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B (2x)
Keywords
:
Rna-Binding, Nuclease, Hydrolase, Endonuclease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Takeshita, S. Zenno, W. C. Lee, K. Nagata, K. Saigo, M. Tanokura
Homodimeric Structure And Double-Stranded Rna Cleavage Activity Of The C-Terminal Rnase Iii Domain Of Human Dicer
J. Mol. Biol. V. 374 106 2007
[
close entry info
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
6
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU C:47 , ASP C:152 , GLU C:155 , HOH C:508 , HOH C:529 , HOH C:571
BINDING SITE FOR RESIDUE MG C 501
2
AC2
SOFTWARE
GLU A:47 , ASP A:152 , GLU A:155 , HOH A:507 , HOH A:514 , HOH A:562
BINDING SITE FOR RESIDUE MG A 502
3
AC3
SOFTWARE
GLU B:47 , ASP B:152 , GLU B:155 , HOH B:513 , HOH B:521 , HOH B:571
BINDING SITE FOR RESIDUE MG B 503
4
AC4
SOFTWARE
ASP A:55 , HOH A:508 , HOH A:559 , ASP C:51 , ASP C:55 , HOH C:535 , HOH C:572
BINDING SITE FOR RESIDUE MG C 504
5
AC5
SOFTWARE
ASP A:51 , HOH A:526 , HOH A:533 , HOH A:553 , HOH A:563
BINDING SITE FOR RESIDUE MG A 505
6
AC6
SOFTWARE
ASP B:51 , HOH B:520 , HOH B:543 , HOH B:565 , HOH B:572
BINDING SITE FOR RESIDUE MG B 506
[
close Site info
]
SAPs(SNPs)/Variants
(10, 30)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_067091 (E47K, chain A/B/C, )
02: VAR_067092 (D51E, chain A/B/C, )
03: VAR_067093 (D51G, chain A/B/C, )
04: VAR_067094 (D51N, chain A/B/C, )
05: VAR_067095 (D152H, chain A/B/C, )
06: VAR_067096 (D152N, chain A/B/C, )
07: VAR_067097 (D152Y, chain A/B/C, )
08: VAR_067098 (E155G, chain A/B/C, )
09: VAR_067099 (E155K, chain A/B/C, )
10: VAR_067100 (E155Q, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_067091
E
1705
K
DICER_HUMAN
Unclassified
---
A/B/C
E
47
K
02
UniProt
VAR_067092
D
1709
E
DICER_HUMAN
Unclassified
---
A/B/C
D
51
E
03
UniProt
VAR_067093
D
1709
G
DICER_HUMAN
Unclassified
---
A/B/C
D
51
G
04
UniProt
VAR_067094
D
1709
N
DICER_HUMAN
Unclassified
---
A/B/C
D
51
N
05
UniProt
VAR_067095
D
1810
H
DICER_HUMAN
Unclassified
---
A/B/C
D
152
H
06
UniProt
VAR_067096
D
1810
N
DICER_HUMAN
Unclassified
---
A/B/C
D
152
N
07
UniProt
VAR_067097
D
1810
Y
DICER_HUMAN
Unclassified
---
A/B/C
D
152
Y
08
UniProt
VAR_067098
E
1813
G
DICER_HUMAN
Unclassified
---
A/B/C
E
155
G
09
UniProt
VAR_067099
E
1813
K
DICER_HUMAN
Unclassified
---
A/B/C
E
155
K
10
UniProt
VAR_067100
E
1813
Q
DICER_HUMAN
Unclassified
---
A/B/C
E
155
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 8)
Info
All PROSITE Patterns/Profiles
1: RNASE_3_2 (A:8-166,B:8-166,C:8-166|-)
2: RNASE_3_1 (A:44-52,B:44-52,C:44-52)
3: DS_RBD (A:191-192,B:191-191)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_3_2
PS50142
Ribonuclease III family domain profile.
DICER_HUMAN
1666-1824
1283-1372
3
A:8-166
B:8-166
C:8-166
-
2
RNASE_3_1
PS00517
Ribonuclease III family signature.
DICER_HUMAN
1702-1710
3
A:44-52
B:44-52
C:44-52
3
DS_RBD
PS50137
Double stranded RNA-binding domain (dsRBD) profile.
DICER_HUMAN
1849-1914
2
A:191-192
B:191-191
[
close PROSITE info
]
Exons
(4, 12)
Info
All Exons
Exon 1.29a (A:2-41 | B:2-41 | C:2-41)
Exon 1.30 (A:41-121 | B:41-121 | C:41-121)
Exon 1.31a (A:142-185 | B:142-185 | C:142-185)
Exon 1.32a (A:185-192 | B:185-191 | C:185-190)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.28/1.29a
2: Boundary 1.29a/1.30
3: Boundary 1.30/1.31a
4: Boundary 1.31a/1.32a
5: Boundary 1.32a/1.32e
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3b
ENST00000393063
3b
ENSE00001514082
chr14:
95608055-95608020
36
DICER_HUMAN
-
0
0
-
-
1.5
ENST00000393063
5
ENSE00001514081
chr14:
95607096-95606996
101
DICER_HUMAN
-
0
0
-
-
1.8b
ENST00000393063
8b
ENSE00002152580
chr14:
95599840-95599652
189
DICER_HUMAN
1-48
48
0
-
-
1.9b
ENST00000393063
9b
ENSE00000660064
chr14:
95599014-95598852
163
DICER_HUMAN
49-103
55
0
-
-
1.10
ENST00000393063
10
ENSE00000660065
chr14:
95597976-95597846
131
DICER_HUMAN
103-146
44
0
-
-
1.11
ENST00000393063
11
ENSE00000660066
chr14:
95596529-95596395
135
DICER_HUMAN
147-191
45
0
-
-
1.12a
ENST00000393063
12a
ENSE00000660067
chr14:
95595969-95595809
161
DICER_HUMAN
192-245
54
0
-
-
1.13
ENST00000393063
13
ENSE00000660068
chr14:
95593085-95592917
169
DICER_HUMAN
245-301
57
0
-
-
1.14a
ENST00000393063
14a
ENSE00000660069
chr14:
95591005-95590533
473
DICER_HUMAN
302-459
158
0
-
-
1.15
ENST00000393063
15
ENSE00000660070
chr14:
95584091-95583959
133
DICER_HUMAN
459-503
45
0
-
-
1.16a
ENST00000393063
16a
ENSE00000660071
chr14:
95583032-95582790
243
DICER_HUMAN
504-584
81
0
-
-
1.17
ENST00000393063
17
ENSE00000660072
chr14:
95582158-95582004
155
DICER_HUMAN
585-636
52
0
-
-
1.18b
ENST00000393063
18b
ENSE00000660073
chr14:
95579561-95579429
133
DICER_HUMAN
636-680
45
0
-
-
1.19
ENST00000393063
19
ENSE00000660074
chr14:
95578584-95578509
76
DICER_HUMAN
681-706
26
0
-
-
1.20b
ENST00000393063
20b
ENSE00001364566
chr14:
95577793-95577654
140
DICER_HUMAN
706-752
47
0
-
-
1.21a
ENST00000393063
21a
ENSE00000858391
chr14:
95574840-95574661
180
DICER_HUMAN
753-812
60
0
-
-
1.22b
ENST00000393063
22b
ENSE00000660077
chr14:
95574430-95574217
214
DICER_HUMAN
813-884
72
0
-
-
1.23
ENST00000393063
23
ENSE00000660078
chr14:
95574098-95573945
154
DICER_HUMAN
884-935
52
0
-
-
1.24
ENST00000393063
24
ENSE00000660079
chr14:
95572560-95572378
183
DICER_HUMAN
935-996
62
0
-
-
1.25
ENST00000393063
25
ENSE00000660080
chr14:
95572120-95572015
106
DICER_HUMAN
996-1031
36
0
-
-
1.26
ENST00000393063
26
ENSE00000660081
chr14:
95571583-95571408
176
DICER_HUMAN
1032-1090
59
0
-
-
1.27a
ENST00000393063
27a
ENSE00000660082
chr14:
95570463-95569683
781
DICER_HUMAN
1090-1350
261
0
-
-
1.28
ENST00000393063
28
ENSE00000660083
chr14:
95566272-95566117
156
DICER_HUMAN
1351-1402
52
0
-
-
1.29a
ENST00000393063
29a
ENSE00000660084
chr14:
95563050-95562162
889
DICER_HUMAN
1403-1699
297
3
A:2-41
B:2-41
C:2-41
40
40
40
1.30
ENST00000393063
30
ENSE00000660085
chr14:
95560493-95560225
269
DICER_HUMAN
1699-1788
90
3
A:41-121
B:41-121
C:41-121
81
81
81
1.31a
ENST00000393063
31a
ENSE00000660087
chr14:
95557702-95557540
163
DICER_HUMAN
1789-1843
55
3
A:142-185
B:142-185
C:142-185
44
44
44
1.32a
ENST00000393063
32a
ENSE00000660089
chr14:
95557446-95557371
76
DICER_HUMAN
1843-1868
26
3
A:185-192
B:185-191
C:185-190
8
7
6
1.32e
ENST00000393063
32e
ENSE00001305539
chr14:
95557000-95552566
4435
DICER_HUMAN
1868-1922
55
0
-
-
[
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asym.Unit (95 KB)
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