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2E8A
Asym. Unit
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Asym.Unit (74 KB)
Biol.Unit 1 (70 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN HSP70 ATPASE DOMAIN IN COMPLEX WITH AMP-PNP
Authors
:
M. Shida, R. Ishii, T. Takagi, S. Kishishita, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
19 Jan 07 (Deposition) - 22 Jan 08 (Release) - 07 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.77
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Anp, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Shida, A. Arakawa, R. Ishii, S. Kishishita, T. Takagi, M. Kukimoto-Niino, S. Sugano, A. Tanaka, M. Shirouzu, S. Yokoyama
Direct Inter-Subdomain Interactions Switch Between The Closed And Open Forms Of The Hsp70 Nucleotide-Binding Domain In The Nucleotide-Free State.
Acta Crystallogr. , Sect. D V. 66 223 2010
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
2a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
ANP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:10 , TYR A:15 , ANP A:601 , HOH A:626
BINDING SITE FOR RESIDUE MG A 501
2
AC2
SOFTWARE
ASP A:10 , GLY A:12 , THR A:13 , THR A:14 , TYR A:15 , GLY A:201 , GLY A:202 , GLY A:203 , THR A:204 , GLY A:230 , GLU A:268 , LYS A:271 , ARG A:272 , SER A:275 , GLY A:338 , GLY A:339 , SER A:340 , ARG A:342 , ILE A:343 , ASP A:366 , MG A:501 , HOH A:616 , HOH A:618 , HOH A:624 , HOH A:626 , HOH A:627 , HOH A:630 , HOH A:653 , HOH A:775 , HOH A:851 , HOH A:959
BINDING SITE FOR RESIDUE ANP A 601
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_032152 (I95V, chain A, )
2: VAR_029053 (E110D, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_032152
I
95
V
HS71B_HUMAN
Polymorphism
---
A
I
95
V
2
UniProt
VAR_029053
E
110
D
HS71A_HUMAN
Polymorphism
562047
A
E
110
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: HSP70_1 (A:9-16,A:9-16)
2: HSP70_2 (A:197-210,A:197-210)
3: HSP70_3 (A:334-348,A:334-348)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HSP70_1
PS00297
Heat shock hsp70 proteins family signature 1.
HS71B_HUMAN
9-16
1
A:9-16
HS71A_HUMAN
9-16
1
A:9-16
2
HSP70_2
PS00329
Heat shock hsp70 proteins family signature 2.
HS71B_HUMAN
197-210
1
A:197-210
HS71A_HUMAN
197-210
1
A:197-210
3
HSP70_3
PS01036
Heat shock hsp70 proteins family signature 3.
HS71B_HUMAN
334-348
1
A:334-348
HS71A_HUMAN
334-348
1
A:334-348
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Exons
(1, 1)
Info
All Exons
Exon 1.3a (A:3-382)
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000391555
3a
ENSE00001509335
HSCHR6_MHC_QBL:31785766-31788290
2525
HS71B_HUMAN
1-713
713
1
A:3-382
380
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2e8aa1 (A:3-187)
1b: SCOP_d2e8aa2 (A:188-382)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Human (Homo sapiens) [TaxId: 9606]
(38)
1a
d2e8aa1
A:3-187
1b
d2e8aa2
A:188-382
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CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_2e8aA02 (A:68-122)
2a: CATH_2e8aA01 (A:3-67,A:123-187,A:361-381)
2b: CATH_2e8aA03 (A:188-229,A:313-360)
3a: CATH_2e8aA04 (A:230-312)
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Organisms
(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Defensin A-like
(149)
Homologous Superfamily
:
[code=3.30.30.30, no name defined]
(60)
Human (Homo sapiens)
(15)
1a
2e8aA02
A:68-122
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Human (Homo sapiens)
(36)
2a
2e8aA01
A:3-67,A:123-187,A:361-381
2b
2e8aA03
A:188-229,A:313-360
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Human (Homo sapiens)
(29)
3a
2e8aA04
A:230-312
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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