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2E89
Asym. Unit
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Asym.Unit (222 KB)
Biol.Unit 1 (110 KB)
Biol.Unit 2 (109 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS TILS IN A COMPLEX WITH ATP, MAGNESIUM ION, AND L-LYSINE
Authors
:
M. Kuratani, Y. Yoshikawa, S. Takahashi, S. Yokoyama, Riken Structur Genomics/Proteomics Initiative (Rsgi)
Date
:
19 Jan 07 (Deposition) - 13 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Rossmann-Fold, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Ligase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Kuratani, Y. Yoshikawa, Y. Bessho, K. Higashijima, T. Ishii, R. Shibata, S. Takahashi, K. Yutani, S. Yokoyama
Structural Basis Of The Initial Binding Of Trna(Ile) Lysidine Synthetase Tils With Atp And L-Lysine
To Be Published
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
1c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
1d: ADENOSINE-5'-TRIPHOSPHATE (ATPd)
2a: LYSINE (LYSa)
3a: MAGNESIUM ION (MGa)
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Label:
No.
Name
Count
Type
Full Name
1
ATP
4
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
LYS
1
Mod. Amino Acid
LYSINE
3
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP C:36 , ALA C:132 , HIS C:134 , ASP C:137 , ATP C:902 , HOH C:932
BINDING SITE FOR RESIDUE MG C 601
2
AC2
SOFTWARE
VAL B:35 , LYS B:182 , TRP B:188 , VAL B:189 , ASP B:191
BINDING SITE FOR RESIDUE LYS B 950
3
AC3
SOFTWARE
ALA A:30 , PHE A:31 , SER A:32 , ALA A:59 , PHE A:61 , ARG A:110 , ARG A:113 , THR A:131 , ALA A:132 , HIS A:133 , ARG A:201
BINDING SITE FOR RESIDUE ATP A 900
4
AC4
SOFTWARE
ALA B:30 , PHE B:31 , SER B:32 , ALA B:59 , HIS B:60 , PHE B:61 , ARG B:110 , ARG B:113 , THR B:131 , ALA B:132 , HIS B:133 , ARG B:201
BINDING SITE FOR RESIDUE ATP B 901
5
AC5
SOFTWARE
ALA C:30 , PHE C:31 , SER C:32 , ALA C:59 , HIS C:60 , PHE C:61 , ARG C:110 , ARG C:113 , THR C:131 , ALA C:132 , HIS C:133 , MG C:601
BINDING SITE FOR RESIDUE ATP C 902
6
AC6
SOFTWARE
ALA D:30 , PHE D:31 , SER D:32 , ASP D:36 , ALA D:59 , HIS D:60 , PHE D:61 , ARG D:113 , THR D:131 , ALA D:132 , HIS D:133 , ARG D:201
BINDING SITE FOR RESIDUE ATP D 903
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2e89a2 (A:217-317)
1b: SCOP_d2e89b2 (B:217-314)
1c: SCOP_d2e89c2 (C:217-314)
1d: SCOP_d2e89d2 (D:217-313)
2a: SCOP_d2e89a1 (A:1-216)
2b: SCOP_d2e89b1 (B:1-216)
2c: SCOP_d2e89c1 (C:1-216)
2d: SCOP_d2e89d1 (D:1-216)
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Protein Domains
(
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(
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MesJ substrate recognition domain-like
(4)
Superfamily
:
MesJ substrate recognition domain-like
(4)
Family
:
MesJ substrate recognition domain-like
(4)
Protein domain
:
TilS-like protein Aq_1887
(3)
Aquifex aeolicus [TaxId: 63363]
(3)
1a
d2e89a2
A:217-317
1b
d2e89b2
B:217-314
1c
d2e89c2
C:217-314
1d
d2e89d2
D:217-313
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Adenine nucleotide alpha hydrolases-like
(110)
Family
:
PP-loop ATPase
(4)
Protein domain
:
TilS-like protein Aq_1887
(3)
Aquifex aeolicus [TaxId: 63363]
(3)
2a
d2e89a1
A:1-216
2b
d2e89b1
B:1-216
2c
d2e89c1
C:1-216
2d
d2e89d1
D:1-216
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (222 KB)
Header - Asym.Unit
Biol.Unit 1 (110 KB)
Header - Biol.Unit 1
Biol.Unit 2 (109 KB)
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