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2E81
Biol. Unit 1
Info
Asym.Unit (99 KB)
Biol.Unit 1 (180 KB)
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(1)
Title
:
CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES WITH BOUND INTERMEDIATE HYDROXYLAMINE
Authors
:
O. Einsle, P. M. H. Kroneck
Date
:
15 Jan 07 (Deposition) - 30 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Multiheme Cytochrome, Nitrite Reductase, Reaction Intermediate, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Einsle, A. Messerschmidt, R. Huber, P. M. H. Kroneck, F. Neese
Mechanism Of The Six-Electron Reduction Of Nitrite To Ammonia By Cytochrome C Nitrite Reductase
J. Am. Chem. Soc. V. 124 11737 2002
(for further references see the
PDB file header
)
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
3a: HYDROXYAMINE (HOAa)
4a: YTTRIUM (III) ION (YT3a)
4b: YTTRIUM (III) ION (YT3b)
4c: YTTRIUM (III) ION (YT3c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
HEM
10
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
HOA
2
Ligand/Ion
HYDROXYAMINE
4
YT3
6
Ligand/Ion
YTTRIUM (III) ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:217 , TYR A:218 , LYS A:274 , GLN A:276 , HOH A:1610 , HOH A:1740
BINDING SITE FOR RESIDUE CA A 513
02
AC2
SOFTWARE
GLU A:52 , ASP A:444 , HOH A:1683 , HOH A:1833 , HOH A:1834 , HOH A:1835 , HOH A:1839
BINDING SITE FOR RESIDUE YT3 A 801
03
AC3
SOFTWARE
PRO A:99 , HEM A:1510 , HEM A:1511 , HOH A:1693 , HOH A:1752 , HOH A:1842 , HOH A:1843
BINDING SITE FOR RESIDUE YT3 A 802
04
AC4
SOFTWARE
GLU A:408 , HEM A:1512 , HOH A:1899
BINDING SITE FOR RESIDUE YT3 A 803
05
AC5
SOFTWARE
TYR A:96 , ASN A:97 , ASP A:108 , ASN A:109 , THR A:112 , ARG A:114 , THR A:115 , LEU A:126 , CYS A:130 , CYS A:133 , LYS A:134 , CYS A:214 , HIS A:215 , TYR A:218 , HIS A:277 , ALA A:398 , HIS A:400 , HOA A:704 , HEM A:1510 , HOH A:1552 , HOH A:1555 , HOH A:1576 , HOH A:1578 , HOH A:1582 , HOH A:1628
BINDING SITE FOR RESIDUE HEM A 1508
06
AC6
SOFTWARE
TYR A:57 , GLN A:60 , TRP A:64 , GLY A:167 , CYS A:168 , CYS A:171 , HIS A:172 , LEU A:179 , HIS A:203 , ARG A:207 , MET A:300 , TYR A:302 , TYR A:310 , SER A:311 , HIS A:313 , HEM A:1510 , HOH A:1877
BINDING SITE FOR RESIDUE HEM A 1509
07
AC7
SOFTWARE
SER A:70 , PRO A:99 , ARG A:100 , GLY A:101 , HIS A:102 , TYR A:104 , ALA A:105 , ASP A:108 , CYS A:133 , LYS A:134 , ILE A:166 , VAL A:210 , CYS A:211 , CYS A:214 , HIS A:215 , VAL A:315 , GLY A:316 , YT3 A:802 , HEM A:1508 , HEM A:1509 , HEM A:1511 , HOH A:1550 , HOH A:1551 , HOH A:1752
BINDING SITE FOR RESIDUE HEM A 1510
08
AC8
SOFTWARE
PRO A:99 , TRP A:280 , TYR A:283 , HIS A:288 , SER A:294 , CYS A:295 , CYS A:298 , HIS A:299 , ASN A:317 , LEU A:319 , HIS A:400 , GLY A:401 , PHE A:403 , PHE A:404 , HIS A:405 , YT3 A:802 , HEM A:1510 , HEM A:1512 , HOH A:1753 , HOH A:1843
BINDING SITE FOR RESIDUE HEM A 1511
09
AC9
SOFTWARE
ILE A:287 , HIS A:288 , VAL A:293 , PRO A:318 , SER A:325 , CYS A:326 , CYS A:329 , HIS A:330 , LEU A:337 , LYS A:344 , PRO A:407 , YT3 A:803 , HEM A:1511 , HOH A:1754 , HOH A:1899
BINDING SITE FOR RESIDUE HEM A 1512
10
BC1
SOFTWARE
ARG A:114 , HIS A:277 , HEM A:1508 , HOH A:1513 , HOH A:1514 , HOH A:1515
BINDING SITE FOR RESIDUE HOA A 704
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (A:163-335)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
NRFA_WOLSU
163-335
2
A:163-335
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2e81a_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Di-heme elbow motif
(53)
Protein domain
:
automated matches
(16)
Wolinella succinogenes [TaxId: 273121]
(2)
1a
d2e81a_
A:
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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