PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2E7C
Asym. Unit
Info
Asym.Unit (628 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE 6TH IG-LIKE DOMAIN FROM HUMAN MYOSIN-BINDING PROTEIN C, FAST-TYPE
Authors
:
X. R. Qin, T. Nagashima, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
09 Jan 07 (Deposition) - 10 Jul 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Ig-Like Domain, Myosin-Binding Protein C, Fast-Type, Fast Mybp-C, C-Protein, Skeletal Muscle Fast-Isoform, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. R. Qin, T. Nagashima, F. Hayashi, S. Yokoyama
Solution Structure Of The 6Th Ig-Like Domain From Human Myosin-Binding Protein C, Fast-Type
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(5, 5)
Info
All Exons
Exon 1.20 (A:1-2)
Exon 1.21 (A:2-20 (gaps))
Exon 1.22 (A:20-49)
Exon 1.23 (A:50-115)
Exon 1.24 (A:115-118)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.19/1.20
2: Boundary 1.20/1.21
3: Boundary 1.21/1.22
4: Boundary 1.22/1.23
5: Boundary 1.23/1.24
6: Boundary 1.24/1.25
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000357701
1
ENSE00001354328
chr19:
50936160-50936229
70
MYPC2_HUMAN
1-7
7
0
-
-
1.2
ENST00000357701
2
ENSE00001301795
chr19:
50938418-50938507
90
MYPC2_HUMAN
7-37
31
0
-
-
1.3
ENST00000357701
3
ENSE00000954625
chr19:
50939033-50939119
87
MYPC2_HUMAN
37-66
30
0
-
-
1.4
ENST00000357701
4
ENSE00000954626
chr19:
50939269-50939417
149
MYPC2_HUMAN
66-115
50
0
-
-
1.5
ENST00000357701
5
ENSE00000954627
chr19:
50939874-50939991
118
MYPC2_HUMAN
116-155
40
0
-
-
1.6
ENST00000357701
6
ENSE00000954628
chr19:
50940730-50940778
49
MYPC2_HUMAN
155-171
17
0
-
-
1.7
ENST00000357701
7
ENSE00000954629
chr19:
50940916-50940975
60
MYPC2_HUMAN
171-191
21
0
-
-
1.8
ENST00000357701
8
ENSE00000954630
chr19:
50944137-50944333
197
MYPC2_HUMAN
191-257
67
0
-
-
1.9
ENST00000357701
9
ENSE00000954631
chr19:
50945438-50945570
133
MYPC2_HUMAN
257-301
45
0
-
-
1.10
ENST00000357701
10
ENSE00000954632
chr19:
50946751-50946875
125
MYPC2_HUMAN
301-343
43
0
-
-
1.11
ENST00000357701
11
ENSE00000954633
chr19:
50946968-50947073
106
MYPC2_HUMAN
343-378
36
0
-
-
1.12
ENST00000357701
12
ENSE00000954634
chr19:
50949137-50949309
173
MYPC2_HUMAN
378-436
59
0
-
-
1.13
ENST00000357701
13
ENSE00000954635
chr19:
50951482-50951647
166
MYPC2_HUMAN
436-491
56
0
-
-
1.14
ENST00000357701
14
ENSE00000721600
chr19:
50954086-50954192
107
MYPC2_HUMAN
491-527
37
0
-
-
1.15
ENST00000357701
15
ENSE00000721593
chr19:
50954537-50954566
30
MYPC2_HUMAN
527-537
11
0
-
-
1.16
ENST00000357701
16
ENSE00000954636
chr19:
50955121-50955260
140
MYPC2_HUMAN
537-583
47
0
-
-
1.17
ENST00000357701
17
ENSE00000954637
chr19:
50957277-50957436
160
MYPC2_HUMAN
584-637
54
0
-
-
1.18
ENST00000357701
18
ENSE00000954638
chr19:
50957522-50957626
105
MYPC2_HUMAN
637-672
36
0
-
-
1.19
ENST00000357701
19
ENSE00000954639
chr19:
50958365-50958553
189
MYPC2_HUMAN
672-735
64
0
-
-
1.20
ENST00000357701
20
ENSE00000954640
chr19:
50958767-50958901
135
MYPC2_HUMAN
735-780
46
1
A:1-2
2
1.21
ENST00000357701
21
ENSE00000869262
chr19:
50961844-50962011
168
MYPC2_HUMAN
780-836
57
1
A:2-20 (gaps)
57
1.22
ENST00000357701
22
ENSE00000954641
chr19:
50962175-50962263
89
MYPC2_HUMAN
836-865
30
1
A:20-49
30
1.23
ENST00000357701
23
ENSE00000869259
chr19:
50962368-50962563
196
MYPC2_HUMAN
866-931
66
1
A:50-115
66
1.24
ENST00000357701
24
ENSE00000954642
chr19:
50963297-50963436
140
MYPC2_HUMAN
931-977
47
1
A:115-118
4
1.25
ENST00000357701
25
ENSE00000954643
chr19:
50964799-50964958
160
MYPC2_HUMAN
978-1031
54
0
-
-
1.26
ENST00000357701
26
ENSE00000954644
chr19:
50965157-50965293
137
MYPC2_HUMAN
1031-1076
46
0
-
-
1.27
ENST00000357701
27
ENSE00001297081
chr19:
50967603-50967789
187
MYPC2_HUMAN
1077-1139
63
0
-
-
1.28
ENST00000357701
28
ENSE00001646879
chr19:
50969452-50969583
132
MYPC2_HUMAN
1139-1141
3
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (628 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2E7C
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help