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Getting 'Exon' information from database.
2E73
Asym. Unit
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Asym.Unit (402 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE PHORBOL ESTERS/DIACYLGLYCEROL BINDING DOMAIN OF PROTEIN KINASE C GAMMA
Authors
:
W. Tanabe, S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
05 Jan 07 (Deposition) - 18 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
C1 Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Tanabe, S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The Phorbol Esters/Diacylglycerol Binding Domain Of Protein Kinase C Gamma
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:49 , CYS A:52 , HIS A:74 , CYS A:77
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
HIS A:36 , CYS A:66 , CYS A:69 , CYS A:85
BINDING SITE FOR RESIDUE ZN A 401
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_017060 (H101Y, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_017060
H
101
Y
KPCG_HUMAN
Disease (SCA14)
---
A
H
101
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: ZF_DAG_PE_2 (A:36-85|A:100-105)
2: ZF_DAG_PE_1 (A:36-85|A:101-105)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_DAG_PE_2
PS50081
Zinc finger phorbol-ester/DAG-type profile.
KPCG_HUMAN
35-85
100-150
2
A:36-85
A:100-105
2
ZF_DAG_PE_1
PS00479
Zinc finger phorbol-ester/DAG-type signature.
KPCG_HUMAN
36-85
101-150
2
A:36-85
A:101-105
[
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Exons
(4, 4)
Info
All Exons
Exon 1.3a (A:29-57 (gaps))
Exon 1.4 (A:57-68)
Exon 1.5 (A:68-95)
Exon 1.6 (A:96-105)
View:
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000263431
3a
ENSE00001245754
chr19:
54385467-54385918
452
KPCG_HUMAN
1-57
57
1
A:29-57 (gaps)
51
1.4
ENST00000263431
4
ENSE00000724605
chr19:
54386417-54386448
32
KPCG_HUMAN
57-68
12
1
A:57-68
12
1.5
ENST00000263431
5
ENSE00000724928
chr19:
54387415-54387497
83
KPCG_HUMAN
68-95
28
1
A:68-95
28
1.6
ENST00000263431
6
ENSE00000895310
chr19:
54392892-54393003
112
KPCG_HUMAN
96-133
38
1
A:96-105
10
1.7c
ENST00000263431
7c
ENSE00000895309
chr19:
54393140-54393271
132
KPCG_HUMAN
133-177
45
0
-
-
1.8b
ENST00000263431
8b
ENSE00001245692
chr19:
54394928-54395084
157
KPCG_HUMAN
177-229
53
0
-
-
1.9
ENST00000263431
9
ENSE00000724715
chr19:
54395763-54395897
135
KPCG_HUMAN
229-274
46
0
-
-
1.10
ENST00000263431
10
ENSE00000724731
chr19:
54396242-54396329
88
KPCG_HUMAN
274-303
30
0
-
-
1.11
ENST00000263431
11
ENSE00000895305
chr19:
54396616-54396645
30
KPCG_HUMAN
304-313
10
0
-
-
1.12
ENST00000263431
12
ENSE00000895303
chr19:
54401213-54401365
153
KPCG_HUMAN
314-364
51
0
-
-
1.13
ENST00000263431
13
ENSE00000895302
chr19:
54401694-54401882
189
KPCG_HUMAN
365-427
63
0
-
-
1.14
ENST00000263431
14
ENSE00000895299
chr19:
54403487-54403578
92
KPCG_HUMAN
428-458
31
0
-
-
1.15
ENST00000263431
15
ENSE00000895298
chr19:
54403673-54403735
63
KPCG_HUMAN
458-479
22
0
-
-
1.16
ENST00000263431
16
ENSE00000895297
chr19:
54403865-54404003
139
KPCG_HUMAN
479-525
47
0
-
-
1.17
ENST00000263431
17
ENSE00001744994
chr19:
54406327-54406407
81
KPCG_HUMAN
526-552
27
0
-
-
1.18
ENST00000263431
18
ENSE00001245768
chr19:
54407889-54407996
108
KPCG_HUMAN
553-588
36
0
-
-
1.19
ENST00000263431
19
ENSE00000895287
chr19:
54409571-54409711
141
KPCG_HUMAN
589-635
47
0
-
-
1.20
ENST00000263431
20
ENSE00000954002
chr19:
54409961-54410906
946
KPCG_HUMAN
636-697
62
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2e73a_ (A:)
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)
Class
:
Small proteins
(3458)
Fold
:
Cysteine-rich domain
(24)
Superfamily
:
Cysteine-rich domain
(24)
Family
:
automated matches
(4)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2e73a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (402 KB)
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