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2E6S
Asym. Unit
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Asym.Unit (375 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE PHD DOMAIN IN RING FINGER PROTEIN 107
Authors
:
S. Kadirvel, F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
28 Dec 06 (Deposition) - 03 Jul 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Phd Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Kadirvel, F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama
Solution Structure Of The Phd Domain In Ring Finger Protein 107
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
3
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:29 , CYS A:32 , HIS A:52 , CYS A:55
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:44 , CYS A:47 , CYS A:71 , CYS A:74
BINDING SITE FOR RESIDUE ZN A 401
3
AC3
SOFTWARE
CYS A:13 , CYS A:16 , CYS A:24 , CYS A:27
BINDING SITE FOR RESIDUE ZN A 601
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ZF_PHD_1 (A:13-74)
2: ZF_PHD_2 (A:26-77)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_PHD_1
PS01359
Zinc finger PHD-type signature.
UHRF2_HUMAN
331-392
1
A:13-74
2
ZF_PHD_2
PS50016
Zinc finger PHD-type profile.
UHRF2_HUMAN
344-395
1
A:26-77
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Exons
(3, 3)
Info
All Exons
Exon 1.8 (A:1-7 (gaps))
Exon 1.9b (A:8-69)
Exon 1.10 (A:69-77)
View:
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Label:
All Exon Boundaries
1: Boundary 1.7b/1.8
2: Boundary 1.8/1.9b
3: Boundary 1.9b/1.10
4: Boundary 1.10/1.11a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000276893
1c
ENSE00001885825
chr9:
6413323-6413643
321
UHRF2_HUMAN
1-51
51
0
-
-
1.4a
ENST00000276893
4a
ENSE00000982094
chr9:
6420912-6421142
231
UHRF2_HUMAN
52-128
77
0
-
-
1.6b
ENST00000276893
6b
ENSE00000982095
chr9:
6433914-6434173
260
UHRF2_HUMAN
129-215
87
0
-
-
1.7b
ENST00000276893
7b
ENSE00001633346
chr9:
6460573-6460791
219
UHRF2_HUMAN
215-288
74
0
-
-
1.8
ENST00000276893
8
ENSE00001089629
chr9:
6475391-6475500
110
UHRF2_HUMAN
288-325
38
1
A:1-7 (gaps)
33
1.9b
ENST00000276893
9b
ENSE00001089631
chr9:
6477622-6477808
187
UHRF2_HUMAN
325-387
63
1
A:8-69
62
1.10
ENST00000276893
10
ENSE00001089634
chr9:
6481643-6481766
124
UHRF2_HUMAN
387-428
42
1
A:69-77
9
1.11a
ENST00000276893
11a
ENSE00001089633
chr9:
6481992-6482099
108
UHRF2_HUMAN
429-464
36
0
-
-
1.13a
ENST00000276893
13a
ENSE00001089637
chr9:
6486821-6486925
105
UHRF2_HUMAN
465-499
35
0
-
-
1.15a
ENST00000276893
15a
ENSE00001356843
chr9:
6493826-6493932
107
UHRF2_HUMAN
500-535
36
0
-
-
1.16b
ENST00000276893
16b
ENSE00001356839
chr9:
6497198-6497360
163
UHRF2_HUMAN
535-589
55
0
-
-
1.17b
ENST00000276893
17b
ENSE00001356835
chr9:
6498018-6498158
141
UHRF2_HUMAN
590-636
47
0
-
-
1.18b
ENST00000276893
18b
ENSE00001356832
chr9:
6499835-6499931
97
UHRF2_HUMAN
637-669
33
0
-
-
1.19
ENST00000276893
19
ENSE00001356830
chr9:
6500552-6500709
158
UHRF2_HUMAN
669-721
53
0
-
-
1.20b
ENST00000276893
20b
ENSE00001356826
chr9:
6504593-6504691
99
UHRF2_HUMAN
722-754
33
0
-
-
1.21b
ENST00000276893
21b
ENSE00001833528
chr9:
6506033-6507054
1022
UHRF2_HUMAN
755-802
48
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2e6sa_ (A:)
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Class
:
Small proteins
(3458)
Fold
:
FYVE/PHD zinc finger
(57)
Superfamily
:
FYVE/PHD zinc finger
(57)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d2e6sa_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (375 KB)
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