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2E56
Asym. Unit
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Asym.Unit (35 KB)
Biol.Unit 1 (30 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN MD-2
Authors
:
U. Ohto, Y. Satow
Date
:
19 Dec 06 (Deposition) - 26 Jun 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Innate Immunity, Lipid-Binding, Lipid Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Ohto, K. Fukase, K. Miyake, Y. Satow
Crystal Structures Of Human Md-2 And Its Complex With Antiendotoxic Lipid Iva.
Science V. 316 1632 2007
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: MYRISTIC ACID (MYRa)
1b: MYRISTIC ACID (MYRb)
1c: MYRISTIC ACID (MYRc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MYR
3
Ligand/Ion
MYRISTIC ACID
2
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:26 , SER A:31 , LYS A:125 , PHE A:126 , GLN A:156 , HOH A:920 , HOH A:926 , HOH A:992
BINDING SITE FOR RESIDUE NAG A 801
2
AC2
SOFTWARE
PHE A:64 , ASN A:114 , LYS A:130 , LYS A:132 , GLU A:150 , VAL A:152 , HOH A:982 , HOH A:1010 , HOH A:1031
BINDING SITE FOR RESIDUE NAG A 901
3
AC3
SOFTWARE
SER A:118 , PHE A:119 , SER A:120 , MYR A:601 , MYR A:701
BINDING SITE FOR RESIDUE MYR A 501
4
AC4
SOFTWARE
MYR A:501 , MYR A:701 , HOH A:1011
BINDING SITE FOR RESIDUE MYR A 601
5
AC5
SOFTWARE
VAL A:48 , ILE A:52 , SER A:120 , MYR A:501 , MYR A:601 , HOH A:990 , HOH A:1014
BINDING SITE FOR RESIDUE MYR A 701
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_050030 (G56G, chain A, )
2: VAR_024532 (P157S, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050030
R
56
G
LY96_HUMAN
Polymorphism
6472812
A
G
56
G
2
UniProt
VAR_024532
P
157
S
LY96_HUMAN
Polymorphism
11466004
A
P
157
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(5, 5)
Info
All Exons
Exon 1.1a (A:17-38)
Exon 1.2 (A:38-68)
Exon 1.3 (A:68-111)
Exon 1.4 (A:111-128)
Exon 1.5b (A:129-160)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5b
6: Boundary 1.5b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000284818
1a
ENSE00001244306
chr8:
74903587-74903789
203
LY96_HUMAN
1-38
38
1
A:17-38
22
1.2
ENST00000284818
2
ENSE00001016737
chr8:
74917031-74917120
90
LY96_HUMAN
38-68
31
1
A:38-68
31
1.3
ENST00000284818
3
ENSE00001016736
chr8:
74922236-74922364
129
LY96_HUMAN
68-111
44
1
A:68-111
44
1.4
ENST00000284818
4
ENSE00001016734
chr8:
74939024-74939076
53
LY96_HUMAN
111-128
18
1
A:111-128
18
1.5b
ENST00000284818
5b
ENSE00002121776
chr8:
74941191-74941322
132
LY96_HUMAN
129-160
32
1
A:129-160
32
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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