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2E49
Biol. Unit 1
Info
Asym.Unit (234 KB)
Biol.Unit 1 (116 KB)
Biol.Unit 2 (116 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN D-AMINO ACID OXIDASE IN COMPLEX WITH IMINO-SERINE
Authors
:
T. Kawazoe, H. Tsuge, T. Imagawa, K. Fukui
Date
:
05 Dec 06 (Deposition) - 06 Mar 07 (Release) - 30 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Structurally Ambivalent Peptide, Imino-Serine Complex, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. Kawazoe, H. Tsuge, T. Imagawa, K. Aki, S. Kuramitsu, K. Fukui
Structural Basis Of D-Dopa Oxidation By D-Amino Acid Oxidase: Alternative Pathway For Dopamine Biosynthesis.
Biochem. Biophys. Res. Commun. V. 355 385 2007
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2a: 3-HYDROXY-2-IMINOPROPANOIC ACID (MH6a)
2b: 3-HYDROXY-2-IMINOPROPANOIC ACID (MH6b)
2c: 3-HYDROXY-2-IMINOPROPANOIC ACID (MH6c)
2d: 3-HYDROXY-2-IMINOPROPANOIC ACID (MH6d)
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No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
MH6
2
Ligand/Ion
3-HYDROXY-2-IMINOPROPANOIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:7 , GLY A:9 , VAL A:10 , ILE A:11 , ALA A:36 , ASP A:37 , ARG A:38 , THR A:43 , THR A:44 , THR A:45 , VAL A:47 , ALA A:48 , GLY A:50 , LEU A:51 , ARG A:162 , LYS A:163 , VAL A:164 , THR A:182 , LEU A:189 , ILE A:202 , GLY A:281 , GLY A:312 , GLY A:313 , TYR A:314 , GLY A:315 , LEU A:316 , THR A:317 , MH6 A:352
BINDING SITE FOR RESIDUE FAD A 351
2
AC2
SOFTWARE
LEU A:215 , TYR A:224 , ARG A:283 , GLY A:313 , FAD A:351
BINDING SITE FOR RESIDUE MH6 A 352
3
AC3
SOFTWARE
ILE B:1006 , GLY B:1007 , VAL B:1010 , ILE B:1011 , ASP B:1037 , ARG B:1038 , THR B:1043 , THR B:1044 , THR B:1045 , ALA B:1048 , GLY B:1050 , LEU B:1051 , ARG B:1162 , VAL B:1164 , THR B:1182 , GLY B:1183 , TRP B:1185 , LEU B:1189 , ILE B:1202 , GLY B:1281 , ARG B:1283 , GLY B:1312 , GLY B:1313 , TYR B:1314 , GLY B:1315 , LEU B:1316 , THR B:1317 , MH6 B:1352
BINDING SITE FOR RESIDUE FAD B 1351
4
AC4
SOFTWARE
TYR B:1224 , TYR B:1228 , ARG B:1283 , GLY B:1313 , FAD B:1351
BINDING SITE FOR RESIDUE MH6 B 1352
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DAO (A:305-323,B:1305-1323)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DAO
PS00677
D-amino acid oxidases signature.
OXDA_HUMAN
305-323
2
A:305-323
B:1305-1323
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2e49A02 (A:89-139,A:196-285)
1b: CATH_2e49B02 (B:1089-1139,B:1196-1285)
1c: CATH_2e49C02 (C:2089-2139,C:2196-2285)
1d: CATH_2e49D02 (D:3089-3139,D:3196-3285)
2a: CATH_2e49A01 (A:1-88,A:140-195,A:286-340)
2b: CATH_2e49B01 (B:1001-1088,B:1140-1195,B:1286-1340)
2c: CATH_2e49C01 (C:2001-2088,C:2140-2195,C:2286-2340)
2d: CATH_2e49D01 (D:3001-3088,D:3140-3195,D:3286-3340)
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)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-Amino Acid Oxidase; Chain A, domain 2
(80)
Homologous Superfamily
:
D-Amino Acid Oxidase, subunit A, domain 2
(80)
Human (Homo sapiens)
(6)
1a
2e49A02
A:89-139,A:196-285
1b
2e49B02
B:1089-1139,B:1196-1285
1c
2e49C02
C:2089-2139,C:2196-2285
1d
2e49D02
D:3089-3139,D:3196-3285
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
2a
2e49A01
A:1-88,A:140-195,A:286-340
2b
2e49B01
B:1001-1088,B:1140-1195,B:1286-1340
2c
2e49C01
C:2001-2088,C:2140-2195,C:2286-2340
2d
2e49D01
D:3001-3088,D:3140-3195,D:3286-3340
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (234 KB)
Header - Asym.Unit
Biol.Unit 1 (116 KB)
Header - Biol.Unit 1
Biol.Unit 2 (116 KB)
Header - Biol.Unit 2
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