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2E3B
Asym. Unit
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Asym.Unit (157 KB)
Biol.Unit 1 (152 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HA-BOUND FORM OF ARTHROMYCES RAMOSUS PEROXIDASE AT 1.3 ANGSTROMS RESOLUTION
Authors
:
K. Fukuyama, T. Okada
Date
:
22 Nov 06 (Deposition) - 20 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Heme Protein, Coordination Geometry Of Heme Iron, Arp, Peroxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Fukuyama, T. Okada
Structures Of Cyanide, Nitric Oxide And Hydroxylamine Complexes Of Arthromyces Ramosusperoxidase At 100 K Refined To 1. 3 A Resolution: Coordination Geometries Of The Ligands To The Haem Iron
Acta Crystallogr. , Sect. D V. 63 472 2007
(for further references see the
PDB file header
)
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Hetero Components
(5, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3a: HYDROXYAMINE (HOAa)
4a: ALPHA-D-MANNOSE (MANa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
HOA
1
Ligand/Ion
HYDROXYAMINE
4
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:111 , VAL A:112 , PHE A:114 , ASN A:143 , NAG A:403 , HOH A:1024 , HOH A:1174 , HOH A:1215
BINDING SITE FOR RESIDUE NAG A 402
2
AC2
SOFTWARE
ALA A:82 , ARG A:104 , ILE A:108 , PHE A:114 , NAG A:402 , HOH A:1140
BINDING SITE FOR RESIDUE NAG A 403
3
AC3
SOFTWARE
SER A:339 , LEU A:340 , PRO A:342 , HOH A:1080 , HOH A:1195 , HOH A:1198 , HOH A:1268 , HOH A:1299
BINDING SITE FOR RESIDUE MAN A 404
4
AC4
SOFTWARE
ASP A:57 , GLY A:75 , ASP A:77 , SER A:79 , HOH A:1066 , HOH A:1067
BINDING SITE FOR RESIDUE CA A 501
5
AC5
SOFTWARE
SER A:185 , ASP A:202 , THR A:204 , VAL A:207 , ASP A:209
BINDING SITE FOR RESIDUE CA A 502
6
AC6
SOFTWARE
ARG A:48 , LEU A:51 , ARG A:52 , PHE A:55 , PRO A:154 , GLY A:155 , PRO A:156 , LEU A:180 , LEU A:181 , ALA A:183 , HIS A:184 , LEU A:186 , ALA A:187 , SER A:188 , GLN A:189 , GLU A:190 , GLY A:191 , LEU A:192 , MET A:243 , SER A:245 , MET A:277 , HOA A:503 , HOH A:1007 , HOH A:1008 , HOH A:1039 , HOH A:1059
BINDING SITE FOR RESIDUE HEM A 401
7
AC7
SOFTWARE
ARG A:52 , PHE A:55 , HIS A:56 , HEM A:401
BINDING SITE FOR RESIDUE HOA A 503
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_2 (A:47-58)
2: PEROXIDASE_4 (A:50-297)
3: PEROXIDASE_1 (A:176-186)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_2
PS00436
Peroxidases active site signature.
PER_ARTRA
67-78
1
A:47-58
2
PEROXIDASE_4
PS50873
Plant heme peroxidase family profile.
PER_ARTRA
70-317
1
A:50-297
3
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
PER_ARTRA
196-206
1
A:176-186
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2e3ba_ (A:)
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Protein Domains
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)
(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
CCP-like
(292)
Protein domain
:
Fungal peroxidase (ligninase)
(28)
Arthromyces ramosus [TaxId: 5451]
(14)
1a
d2e3ba_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (157 KB)
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