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2E37
Biol. Unit 6
Info
Asym.Unit (397 KB)
Biol.Unit 1 (196 KB)
Biol.Unit 2 (196 KB)
Biol.Unit 3 (104 KB)
Biol.Unit 4 (196 KB)
Biol.Unit 5 (198 KB)
Biol.Unit 6 (201 KB)
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(1)
Title
:
STRUCTURE OF TT0471 PROTEIN FROM THERMUS THERMOPHILUS
Authors
:
N. K. Lokanath, Riken Structural Genomics/Proteomics Initiative
Date
:
21 Nov 06 (Deposition) - 27 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (2x)
Biol. Unit 2: C,D,E,F (1x)
Biol. Unit 3: G,H (1x)
Biol. Unit 4: A,B,C,D (1x)
Biol. Unit 5: E,F,G,H (1x)
Biol. Unit 6: G,H (2x)
Keywords
:
Nad/Nadp Binding Dehydrogenase, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. K. Lokanath, N. Kunishima
Structure Of Tt0471 Protein From Thermus Thermophilus
To Be Published
[
close entry info
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
2
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ASP H:32 , LEU H:33 , TYR H:62 , ALA H:75
BINDING SITE FOR RESIDUE SO4 H 1502
2
AC6
SOFTWARE
SER G:8 , GLY G:9 , MSE G:10 , VAL G:11 , ASP G:32 , LEU G:33 , LEU G:37 , ALA G:75 , GLY G:76 , VAL G:77 , ASN G:92 , VAL G:95 , ASN G:117 , ILE G:221 , ALA G:226 , THR G:227 , HOH G:1437 , HOH G:1480
BINDING SITE FOR RESIDUE NAD G 1404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: L_LDH (G:169-175,H:169-175)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
L_LDH
PS00064
L-lactate dehydrogenase active site.
LDH_THET8
169-175
4
-
-
-
-
-
-
G:169-175
H:169-175
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2e37a2 (A:142-310)
1b: SCOP_d2e37b2 (B:142-310)
1c: SCOP_d2e37c2 (C:142-310)
1d: SCOP_d2e37d2 (D:142-310)
1e: SCOP_d2e37e2 (E:142-310)
1f: SCOP_d2e37f2 (F:142-310)
1g: SCOP_d2e37g2 (G:142-310)
1h: SCOP_d2e37h2 (H:142-310)
2a: SCOP_d2e37a1 (A:1-141)
2b: SCOP_d2e37b1 (B:1-141)
2c: SCOP_d2e37c1 (C:1-141)
2d: SCOP_d2e37d1 (D:1-141)
2e: SCOP_d2e37e1 (E:1-141)
2f: SCOP_d2e37f1 (F:1-141)
2g: SCOP_d2e37g1 (G:1-141)
2h: SCOP_d2e37h1 (H:1-141)
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)
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)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
automated matches
(38)
Protein domain
:
automated matches
(38)
Thermus thermophilus HB8 [TaxId: 300852]
(7)
1a
d2e37a2
A:142-310
1b
d2e37b2
B:142-310
1c
d2e37c2
C:142-310
1d
d2e37d2
D:142-310
1e
d2e37e2
E:142-310
1f
d2e37f2
F:142-310
1g
d2e37g2
G:142-310
1h
d2e37h2
H:142-310
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Thermus thermophilus HB8 [TaxId: 300852]
(16)
2a
d2e37a1
A:1-141
2b
d2e37b1
B:1-141
2c
d2e37c1
C:1-141
2d
d2e37d1
D:1-141
2e
d2e37e1
E:1-141
2f
d2e37f1
F:1-141
2g
d2e37g1
G:1-141
2h
d2e37h1
H:1-141
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2e37A01 (A:2-141)
1b: CATH_2e37C01 (C:2-141)
1c: CATH_2e37E01 (E:2-141)
1d: CATH_2e37F01 (F:2-141)
1e: CATH_2e37G01 (G:2-141)
1f: CATH_2e37H01 (H:2-141)
1g: CATH_2e37B01 (B:2-141)
1h: CATH_2e37D01 (D:2-141)
2a: CATH_2e37A02 (A:142-310)
2b: CATH_2e37D02 (D:142-310)
2c: CATH_2e37F02 (F:142-310)
2d: CATH_2e37H02 (H:142-310)
2e: CATH_2e37B02 (B:142-310)
2f: CATH_2e37C02 (C:142-310)
2g: CATH_2e37G02 (G:142-310)
2h: CATH_2e37E02 (E:142-310)
View:
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(8)
1a
2e37A01
A:2-141
1b
2e37C01
C:2-141
1c
2e37E01
E:2-141
1d
2e37F01
F:2-141
1e
2e37G01
G:2-141
1f
2e37H01
H:2-141
1g
2e37B01
B:2-141
1h
2e37D01
D:2-141
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2
(116)
Homologous Superfamily
:
L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2
(116)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(1)
2a
2e37A02
A:142-310
2b
2e37D02
D:142-310
2c
2e37F02
F:142-310
2d
2e37H02
H:142-310
2e
2e37B02
B:142-310
2f
2e37C02
C:142-310
2g
2e37G02
G:142-310
2h
2e37E02
E:142-310
[
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Pfam Domains
(0, 0)
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all PFAM domains
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