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2E29
Asym. Unit
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Asym.Unit (470 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE GUCT DOMAIN FROM HUMAN ATP-DEPENDENT RNA HELICASE DDX50, DEAD BOX PROTEIN 50
Authors
:
S. Ohnishi, K. Paakkonen, P. Guntert, M. Sato, S. Koshiba, T. Harada, S. Watanabe, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
10 Nov 06 (Deposition) - 15 May 07 (Release) - 02 Dec 08 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Atp Binding, Helicase, Hydrolase, Nuclear Protein, Nucleotide-Binding, Rna-Binding, Guct Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
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Reference
:
S. Ohnishi, K. Paakkonen, S. Koshiba, N. Tochio, M. Sato, N. Kobayashi, T. Harada, S. Watanabe, Y. Muto, P. Guntert, A. Tanaka, T. Kigawa, S. Yokoyama
Solution Structure Of The Guct Domain From Human Rna Helicase Ii/Gubeta Reveals The Rrm Fold, But Implausible Rna Interactions
Proteins V. 74 133 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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Exons
(4, 4)
Info
All Exons
Exon 1.14 (A:1-18 (gaps))
Exon 1.15 (A:19-63)
Exon 1.16 (A:64-78)
Exon 1.17b (A:79-92)
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1: Boundary 1.13b/1.14
2: Boundary 1.14/1.15
3: Boundary 1.15/1.16
4: Boundary 1.16/1.17b
5: Boundary 1.17b/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000373585
1a
ENSE00001461052
chr10:
70661034-70661227
194
DDX50_HUMAN
1-29
29
0
-
-
1.4
ENST00000373585
4
ENSE00000933680
chr10:
70666467-70666763
297
DDX50_HUMAN
30-128
99
0
-
-
1.5
ENST00000373585
5
ENSE00000834206
chr10:
70670063-70670138
76
DDX50_HUMAN
129-154
26
0
-
-
1.6b
ENST00000373585
6b
ENSE00001026806
chr10:
70670824-70671002
179
DDX50_HUMAN
154-213
60
0
-
-
1.7b
ENST00000373585
7b
ENSE00000834207
chr10:
70672918-70673035
118
DDX50_HUMAN
214-253
40
0
-
-
1.8b
ENST00000373585
8b
ENSE00000933681
chr10:
70673147-70673332
186
DDX50_HUMAN
253-315
63
0
-
-
1.9
ENST00000373585
9
ENSE00000707030
chr10:
70673815-70673960
146
DDX50_HUMAN
315-363
49
0
-
-
1.10a
ENST00000373585
10a
ENSE00000707041
chr10:
70679588-70679737
150
DDX50_HUMAN
364-413
50
0
-
-
1.11
ENST00000373585
11
ENSE00000707057
chr10:
70693955-70694116
162
DDX50_HUMAN
414-467
54
0
-
-
1.12b
ENST00000373585
12b
ENSE00001026805
chr10:
70694555-70694674
120
DDX50_HUMAN
468-507
40
0
-
-
1.13b
ENST00000373585
13b
ENSE00001026811
chr10:
70695762-70695835
74
DDX50_HUMAN
508-532
25
0
-
-
1.14
ENST00000373585
14
ENSE00001026819
chr10:
70696692-70696851
160
DDX50_HUMAN
532-585
54
1
A:1-18 (gaps)
29
1.15
ENST00000373585
15
ENSE00001026801
chr10:
70700816-70700950
135
DDX50_HUMAN
586-630
45
1
A:19-63
45
1.16
ENST00000373585
16
ENSE00001026810
chr10:
70702969-70703013
45
DDX50_HUMAN
631-645
15
1
A:64-78
15
1.17b
ENST00000373585
17b
ENSE00001460966
chr10:
70706108-70706603
496
DDX50_HUMAN
646-737
92
1
A:79-92
14
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SCOP Domains
(1, 1)
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1a: SCOP_d2e29a1 (A:8-92)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
GUCT domain
(1)
Protein domain
:
ATP-dependent RNA helicase DDX50
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2e29a1
A:8-92
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