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2E26
Asym. Unit
Info
Asym.Unit (133 KB)
Biol.Unit 1 (125 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TWO REPEAT FRAGMENT OF REELIN
Authors
:
N. Yasui, T. Nogi, T. Kitao, J. Takagi
Date
:
08 Nov 06 (Deposition) - 22 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Yasui, T. Nogi, T. Kitao, Y. Nakano, M. Hattori, J. Takagi
Structure Of A Receptor-Binding Fragment Of Reelin And Mutational Analysis Reveal A Recognition Mechanism Similar To Endocytic Receptors.
Proc. Natl. Acad. Sci. Usa V. 104 9988 2007
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Hetero Components
(5, 14)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: BETA-D-MANNOSE (BMAa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
CA
4
Ligand/Ion
CALCIUM ION
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
ZN
2
Ligand/Ion
ZINC ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
NAG A:4 , ASP A:2168 , ASN A:2317 , SER A:2319 , ASN A:2321 , HOH A:3048
BINDING SITE FOR RESIDUE NAG A 3
02
AC2
SOFTWARE
NAG A:3
BINDING SITE FOR RESIDUE NAG A 4
03
AC3
SOFTWARE
ASN A:2145 , LYS A:2148
BINDING SITE FOR RESIDUE NAG A 1
04
AC4
SOFTWARE
NAG A:6 , THR A:2517 , ASN A:2569 , THR A:2571 , ASN A:2572 , HOH A:3103
BINDING SITE FOR RESIDUE NAG A 5
05
AC5
SOFTWARE
NAG A:5 , BMA A:7 , ASN A:2572
BINDING SITE FOR RESIDUE NAG A 6
06
AC6
SOFTWARE
NAG A:6 , ASP A:2466
BINDING SITE FOR RESIDUE BMA A 7
07
AC7
SOFTWARE
ASN A:2269
BINDING SITE FOR RESIDUE NAG A 2
08
AC8
SOFTWARE
ASN A:2522 , ASN A:2524 , SER A:2549 , LEU A:2551 , ASP A:2657 , HOH A:2707
BINDING SITE FOR RESIDUE CA A 601
09
AC9
SOFTWARE
ASP A:2173 , GLU A:2175 , ASN A:2202 , ASP A:2310 , GLN A:2311 , HOH A:2724
BINDING SITE FOR RESIDUE CA A 602
10
BC1
SOFTWARE
GLU A:2397 , GLU A:2399 , ARG A:2458 , HIS A:2460 , HOH A:2999 , HOH A:3055
BINDING SITE FOR RESIDUE ZN A 603
11
BC2
SOFTWARE
ASP A:2327 , THR A:2351 , ASP A:2353 , ASP A:2474 , HOH A:2849 , HOH A:2996
BINDING SITE FOR RESIDUE CA A 604
12
BC3
SOFTWARE
THR A:1961 , ASP A:1963 , GLU A:1993 , SER A:1995 , ASP A:2125 , HOH A:3084
BINDING SITE FOR RESIDUE CA A 605
13
BC4
SOFTWARE
HIS A:2061 , HIS A:2074 , GLU A:2264
BINDING SITE FOR RESIDUE ZN A 606
14
BC5
SOFTWARE
ASP A:2168 , PHE A:2169 , GLY A:2315 , GLY A:2316 , HOH A:2723 , HOH A:3035
BINDING SITE FOR RESIDUE ACT A 607
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 4)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (-|-|A:2129-2161|A:2478-2509|-)
2: EGF_1 (-|-|-|A:2149-2160|A:2497-2508|-|-)
3: EGF_2 (-|-|-|-|A:2149-2160|-)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
RELN_MOUSE
671-702
1030-1061
2129-2161
2478-2509
3228-3260
2
-
-
A:2129-2161
A:2478-2509
-
2
EGF_1
PS00022
EGF-like domain signature 1.
RELN_MOUSE
690-701
1049-1060
1784-1795
2149-2160
2497-2508
2872-2883
3248-3259
2
-
-
-
A:2149-2160
A:2497-2508
-
-
3
EGF_2
PS01186
EGF-like domain signature 2.
RELN_MOUSE
690-701
1049-1060
1428-1441
1784-1795
2149-2160
2872-2883
1
-
-
-
-
A:2149-2160
-
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (133 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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