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Getting 'Exon' information from database.
2E0L
Asym. Unit
Info
Asym.Unit (57 KB)
Biol.Unit 1 (26 KB)
Biol.Unit 2 (27 KB)
Biol.Unit 3 (97 KB)
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(1)
Title
:
MUTANT HUMAN RIBONUCLEASE 1 (Q28L, R31L, R32L)
Authors
:
H. Yamada, T. Tamada, M. Kosaka, R. Kuroki
Date
:
10 Oct 06 (Deposition) - 28 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (2x)
Keywords
:
Mutant Human Pancreatic Ribonuclease 1, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Yamada, T. Tamada, M. Kosaka, K. Miyata, S. Fujiki, M. Tano, M. Moriya, M. Yamanishi, E. Honjo, H. Tada, T. Ino, H. Yamaguchi, J. Futami, M. Seno, T. Nomoto, T. Hirata, M. Yoshimura, R. Kuroki
'Crystal Lattice Engineering, ' An Approach To Engineer Protein Crystal Contacts By Creating Intermolecular Symmetry: Crystallization And Structure Determination Of A Mutant Human Rnase 1 With A Hydrophobic Interface Of Leucines
Protein Sci. V. 16 1389 2007
[
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Hetero Components
(2, 19)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
8
Ligand/Ion
CADMIUM ION
2
CL
11
Ligand/Ion
CHLORIDE ION
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC8 (SOFTWARE)
07: AC9 (SOFTWARE)
08: AD1 (SOFTWARE)
09: AD2 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:125 , GLU B:125
BINDING SITE FOR RESIDUE CD A 1001
02
AC4
SOFTWARE
CL A:2001 , CL A:2002
BINDING SITE FOR RESIDUE CD A 1002
03
AC5
SOFTWARE
ASP A:126 , CL A:2005 , CL A:2006 , HOH A:2111
BINDING SITE FOR RESIDUE CD A 1004
04
AC6
SOFTWARE
HIS A:119 , CL A:2009 , HOH A:2153
BINDING SITE FOR RESIDUE CD A 1006
05
AC7
SOFTWARE
GLU A:49 , HIS A:80 , CL A:2011 , HOH A:2033 , HOH A:2122 , HOH A:2132
BINDING SITE FOR RESIDUE CD A 1008
06
AC8
SOFTWARE
LYS A:102 , ARG A:104 , SER A:123 , CD A:1002 , CL A:2002
BINDING SITE FOR RESIDUE CL A 2001
07
AC9
SOFTWARE
LYS A:102 , ARG A:104 , GLU A:125 , CD A:1002 , CL A:2001
BINDING SITE FOR RESIDUE CL A 2002
08
AD1
SOFTWARE
ASP A:83 , ARG A:85 , SER A:100 , LYS A:102 , ASP A:126 , CD A:1004
BINDING SITE FOR RESIDUE CL A 2005
09
AD2
SOFTWARE
LYS A:74 , ARG A:85 , VAL A:124 , CD A:1004
BINDING SITE FOR RESIDUE CL A 2006
10
BC1
SOFTWARE
HIS A:12 , HIS A:119 , PHE A:120 , CD A:1006 , HOH A:2063
BINDING SITE FOR RESIDUE CL A 2009
11
BC2
SOFTWARE
GLU A:49 , HIS A:80 , CD A:1008 , HOH A:2019 , HOH A:2096 , SER B:77
BINDING SITE FOR RESIDUE CL A 2011
12
BC3
SOFTWARE
CL B:2003 , CL B:2004
BINDING SITE FOR RESIDUE CD B 1003
13
BC4
SOFTWARE
GLU B:49 , HIS B:80 , CL B:2007 , CL B:2008 , HOH B:2093 , HOH B:2122
BINDING SITE FOR RESIDUE CD B 1005
14
BC5
SOFTWARE
HIS B:119 , CL B:2010 , HOH B:2187 , HOH B:2205
BINDING SITE FOR RESIDUE CD B 1007
15
BC6
SOFTWARE
LYS B:102 , ARG B:104 , SER B:123 , CD B:1003 , CL B:2004
BINDING SITE FOR RESIDUE CL B 2003
16
BC7
SOFTWARE
LYS B:102 , ARG B:104 , GLU B:125 , CD B:1003 , CL B:2003
BINDING SITE FOR RESIDUE CL B 2004
17
BC8
SOFTWARE
SER A:77 , GLU B:49 , HIS B:80 , CD B:1005 , CL B:2008 , HOH B:2021 , HOH B:2097
BINDING SITE FOR RESIDUE CL B 2007
18
BC9
SOFTWARE
SER A:77 , HIS B:80 , CD B:1005 , CL B:2007 , HOH B:2093
BINDING SITE FOR RESIDUE CL B 2008
19
CC1
SOFTWARE
HIS B:12 , HIS B:119 , PHE B:120 , CD B:1007 , HOH B:2052
BINDING SITE FOR RESIDUE CL B 2010
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RNASE_PANCREATIC (A:40-46,B:40-46)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_PANCREATIC
PS00127
Pancreatic ribonuclease family signature.
RNAS1_HUMAN
68-74
2
A:40-46
B:40-46
[
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]
Exons
(1, 2)
Info
All Exons
Exon 1.3a (A:1-128 | B:1-128)
View:
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All Exon Boundaries
1: Boundary 1.2c/1.3a
2: Boundary 1.3a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000397970
1c
ENSE00001915577
chr14:
21271007-21270956
52
RNAS1_HUMAN
-
0
0
-
-
1.2c
ENST00000397970
2c
ENSE00001530999
chr14:
21270478-21270408
71
RNAS1_HUMAN
-
0
0
-
-
1.3a
ENST00000397970
3a
ENSE00001837426
chr14:
21270252-21269542
711
RNAS1_HUMAN
1-165
165
2
A:1-128
B:1-128
128
128
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2e0la_ (A:)
1b: SCOP_d2e0lb_ (B:)
View:
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Label:
Classes
(
)
(
)
Folds
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(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
RNase A-like
(356)
Superfamily
:
RNase A-like
(356)
Family
:
Ribonuclease A-like
(347)
Protein domain
:
automated matches
(86)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2e0la_
A:
1b
d2e0lb_
B:
[
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]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2e0lA00 (A:1-128)
1b: CATH_2e0lB00 (B:1-128)
View:
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Classes
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Architectures
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(
)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
P-30 Protein
(299)
Homologous Superfamily
:
P-30 Protein
(299)
Human (Homo sapiens)
(46)
1a
2e0lA00
A:1-128
1b
2e0lB00
B:1-128
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (57 KB)
Header - Asym.Unit
Biol.Unit 1 (26 KB)
Header - Biol.Unit 1
Biol.Unit 2 (27 KB)
Header - Biol.Unit 2
Biol.Unit 3 (97 KB)
Header - Biol.Unit 3
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