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2DZI
Asym. Unit
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Asym.Unit (424 KB)
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Models
(20 )
Title
:
2DZI/SOLUTION STRUCTURE OF THE N-TERMINAL UBIQUITIN-LIKE DOMAIN IN HUMAN UBIQUITIN-LIKE PROTEIN 4A (GDX)
Authors
:
C. Zhao, M. Sato, S. Koshiba, S. Watanabe, T. Harada, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
29 Sep 06 (Deposition) - 29 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Ubiquitin-Like Protein 4A, Gdx, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Zhao, M. Sato, S. Koshiba, S. Watanabe, T. Harada, T. Kigawa, S. Yokoyama
2Dzi/Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4A (Gdx)
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:8-79)
2: UBIQUITIN_1 (A:34-59)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
UBL4A_HUMAN
1-72
1
A:8-79
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
UBL4A_HUMAN
27-52
1
A:34-59
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Exons
(3, 3)
Info
All Exons
Exon 1.1a (A:8-23)
Exon 1.2a (A:24-59)
Exon 1.2e (A:59-81)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.2e
4: Boundary 1.2e/1.3e
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000369660
1a
ENSE00001929885
X:153715009-153714876
134
UBL4A_HUMAN
1-16
16
1
A:8-23
16
1.2a
ENST00000369660
2a
ENSE00000678584
X:153714672-153714567
106
UBL4A_HUMAN
17-52
36
1
A:24-59
36
1.2e
ENST00000369660
2e
ENSE00001620198
X:153714318-153714110
209
UBL4A_HUMAN
52-121
70
1
A:59-81
23
1.3e
ENST00000369660
3e
ENSE00001450568
X:153713988-153712056
1933
UBL4A_HUMAN
122-157
36
0
-
-
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SCOP Domains
(1, 1)
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1a: SCOP_d2dzia_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
automated matches
(55)
Protein domain
:
automated matches
(55)
Human (Homo sapiens) [TaxId: 9606]
(39)
1a
d2dzia_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_2dziA00 (A:1-81)
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
2dziA00
A:1-81
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Pfam Domains
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Chain A
Asymmetric Unit 1
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