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2DYL
Asym. Unit
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Asym.Unit (50 KB)
Biol.Unit 1 (46 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN MITOGEN-ACTIVATED PROTEIN KINASE KINASE 7 ACTIVATED MUTANT (S287D, T291D)
Authors
:
M. Kukimoto-Niino, T. Takagi, T. Kaminishi, T. Uchikubo-Kamo, T. Terada, O. Matsuzaki, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
15 Sep 06 (Deposition) - 28 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Mkk7, Kinase, Activated Mutant, Atp-Binding, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Kukimoto-Niino, T. Takagi, T. Kaminishi, T. Uchikubo-Kamo, T. Terada, O. Matsuzaki, M. Shirouzu, S. Yokoyama
Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287D, T291D)
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_040825 (N134S, chain A, )
2: VAR_040826 (R154C, chain A, )
3: VAR_040827 (R178C, chain A, )
4: VAR_040828 (R178H, chain A, )
5: VAR_040829 (A211T, chain A, )
6: VAR_029890 (L275F, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_040825
N
118
S
MP2K7_HUMAN
Polymorphism
56316660
A
N
134
S
2
UniProt
VAR_040826
R
138
C
MP2K7_HUMAN
Polymorphism
56106612
A
R
154
C
3
UniProt
VAR_040827
R
162
C
MP2K7_HUMAN
Unclassified
---
A
R
178
C
4
UniProt
VAR_040828
R
162
H
MP2K7_HUMAN
Unclassified
---
A
R
178
H
5
UniProt
VAR_040829
A
195
T
MP2K7_HUMAN
Polymorphism
55800262
A
A
211
T
6
UniProt
VAR_029890
L
259
F
MP2K7_HUMAN
Polymorphism
1053566
A
L
275
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ST (A:255-267)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
MP2K7_HUMAN
239-251
1
A:255-267
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Exons
(9, 9)
Info
All Exons
Exon 1.5a (A:119-127)
Exon 1.5g (A:128-165 (gaps))
Exon 1.5i (A:166-205)
Exon 1.5k (A:206-241)
Exon 1.6b (A:242-301 (gaps))
Exon 1.7a (A:302-328 (gaps))
Exon 1.8b (A:329-376)
Exon 1.9 (A:376-391)
Exon 1.10c (A:392-418)
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All Exon Boundaries
01: Boundary 1.4/1.5a
02: Boundary 1.5a/1.5g
03: Boundary 1.5g/1.5i
04: Boundary 1.5i/1.5k
05: Boundary 1.5k/1.6b
06: Boundary 1.6b/1.7a
07: Boundary 1.7a/1.8b
08: Boundary 1.8b/1.9
09: Boundary 1.9/1.10c
10: Boundary 1.10c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000397979
1d
ENSE00001824378
chr19:
7968776-7968953
178
MP2K7_HUMAN
1-42
42
0
-
-
1.4
ENST00000397979
4
ENSE00001283257
chr19:
7974640-7974781
142
MP2K7_HUMAN
42-89
48
0
-
-
1.5a
ENST00000397979
5a
ENSE00001531073
chr19:
7974948-7975014
67
MP2K7_HUMAN
89-111
23
1
A:119-127
9
1.5g
ENST00000397979
5g
ENSE00001531069
chr19:
7975145-7975258
114
MP2K7_HUMAN
112-149
38
1
A:128-165 (gaps)
38
1.5i
ENST00000397979
5i
ENSE00000356335
chr19:
7975338-7975457
120
MP2K7_HUMAN
150-189
40
1
A:166-205
40
1.5k
ENST00000397979
5k
ENSE00000671595
chr19:
7975581-7975688
108
MP2K7_HUMAN
190-225
36
1
A:206-241
36
1.6b
ENST00000397979
6b
ENSE00000874653
chr19:
7975865-7976044
180
MP2K7_HUMAN
226-285
60
1
A:242-301 (gaps)
60
1.7a
ENST00000397979
7a
ENSE00000874654
chr19:
7976135-7976215
81
MP2K7_HUMAN
286-312
27
1
A:302-328 (gaps)
27
1.8b
ENST00000397979
8b
ENSE00000356339
chr19:
7976321-7976463
143
MP2K7_HUMAN
313-360
48
1
A:329-376
48
1.9
ENST00000397979
9
ENSE00000356340
chr19:
7977034-7977079
46
MP2K7_HUMAN
360-375
16
1
A:376-391
16
1.10c
ENST00000397979
10c
ENSE00001296605
chr19:
7977182-7979363
2182
MP2K7_HUMAN
376-419
44
1
A:392-418
27
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2dyla_ (A:)
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(
)
(
)
Folds
(
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(
)
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
automated matches
(529)
Protein domain
:
automated matches
(529)
Human (Homo sapiens) [TaxId: 9606]
(438)
1a
d2dyla_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2dylA01 (A:119-215)
2a: CATH_2dylA02 (A:216-418)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2dylA01
A:119-215
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2dylA02
A:216-418
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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