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2DUT
Asym. Unit
Info
Asym.Unit (233 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (59 KB)
Biol.Unit 3 (59 KB)
Biol.Unit 4 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A M-LOOP DELETION VARIANT OF MENT IN THE NATIVE CONFORMATION
Authors
:
J. C. Whisstock, A. M. Buckle, S. Mcgowan, J. A. Irving
Date
:
26 Jul 06 (Deposition) - 08 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Serine Protease Inhibitor, Serpin, Hydrolase Inhibitor
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Mcgowan, A. M. Buckle, J. A. Irving, P. C. Ong, T. A. Bashtannyk-Puhalovich, W. T. Kan, K. N. Henderson, Y. A. Bulynko, E. Y. Popova, A. I. Smith, S. P. Bottomley, J. Rossjohn, S. A. Grigoryev, R. N. Pike, J. C. Whisstock
X-Ray Crystal Structure Of Ment: Evidence For Functional Loop-Sheet Polymers In Chromatin Condensation
Embo J. V. 25 3144 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(7, 28)
Info
All Exons
Exon 1.3 (A:1-56 | B:1-56 | C:1-56 | D:1-56)
Exon 1.4 (A:57-60 | B:57-60 | C:57-60 | D:57...)
Exon 1.5 (A:94-130 | B:94-130 | C:94-130 | D...)
Exon 1.6 (A:131-170 | B:131-170 | C:131-170 ...)
Exon 1.7 (A:170-217 (gaps) | B:170-217 (gaps...)
Exon 1.8 (A:218-273 (gaps) | B:218-273 (gaps...)
Exon 1.9b (A:274-410 (gaps) | B:274-410 (gaps...)
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All Exon Boundaries
1: Boundary 1.1/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8
7: Boundary 1.8/1.9b
8: Boundary 1.9b/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSGALT00000020990
1
ENSGALE00000198668
chr2:
68886128-68886071
58
SPB10_CHICK
-
0
0
-
-
1.3
ENSGALT00000020990
3
ENSGALE00000138883
chr2:
68884812-68884636
177
SPB10_CHICK
1-56
56
4
A:1-56
B:1-56
C:1-56
D:1-56
56
56
56
56
1.4
ENSGALT00000020990
4
ENSGALE00000138892
chr2:
68884248-68884165
84
SPB10_CHICK
57-84
28
4
A:57-60
B:57-60
C:57-60
D:57-60
4
4
4
4
1.5
ENSGALT00000020990
5
ENSGALE00000138886
chr2:
68883776-68883639
138
SPB10_CHICK
85-130
46
4
A:94-130
B:94-130
C:94-130
D:94-130
37
37
37
37
1.6
ENSGALT00000020990
6
ENSGALE00000138856
chr2:
68882877-68882760
118
SPB10_CHICK
131-170
40
4
A:131-170
B:131-170
C:131-170
D:131-170
40
40
40
40
1.7
ENSGALT00000020990
7
ENSGALE00000138882
chr2:
68882389-68882247
143
SPB10_CHICK
170-217
48
4
A:170-217 (gaps)
B:170-217 (gaps)
C:170-217 (gaps)
D:170-217 (gaps)
48
48
48
48
1.8
ENSGALT00000020990
8
ENSGALE00000138871
chr2:
68881414-68881247
168
SPB10_CHICK
218-273
56
4
A:218-273 (gaps)
B:218-273 (gaps)
C:218-273 (gaps)
D:218-273 (gaps)
56
56
56
56
1.9b
ENSGALT00000020990
9b
ENSGALE00000138898
chr2:
68880924-68879734
1191
SPB10_CHICK
274-410
137
4
A:274-410 (gaps)
B:274-410 (gaps)
C:274-410 (gaps)
D:274-410 (gaps)
137
137
137
137
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SCOP Domains
(0, 0)
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2dutA01 (A:1-198,A:302-355)
1b: CATH_2dutB01 (B:1-198,B:302-355)
1c: CATH_2dutC01 (C:1-198,C:302-355)
1d: CATH_2dutD01 (D:1-198,D:302-355)
2a: CATH_2dutA02 (A:199-301,A:362-404)
2b: CATH_2dutB02 (B:199-301,B:362-404)
2c: CATH_2dutC02 (C:199-301,C:362-404)
2d: CATH_2dutD02 (D:199-301,D:362-404)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Antithrombin; Chain I, domain 2
(100)
Homologous Superfamily
:
Antithrombin, subunit I, domain 2
(100)
Chicken (Gallus gallus)
(7)
1a
2dutA01
A:1-198,A:302-355
1b
2dutB01
B:1-198,B:302-355
1c
2dutC01
C:1-198,C:302-355
1d
2dutD01
D:1-198,D:302-355
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Alpha-1-antitrypsin; domain 1
(101)
Homologous Superfamily
:
Alpha-1-antitrypsin, domain 1
(101)
Chicken (Gallus gallus)
(7)
2a
2dutA02
A:199-301,A:362-404
2b
2dutB02
B:199-301,B:362-404
2c
2dutC02
C:199-301,C:362-404
2d
2dutD02
D:199-301,D:362-404
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (233 KB)
Header - Asym.Unit
Biol.Unit 1 (59 KB)
Header - Biol.Unit 1
Biol.Unit 2 (59 KB)
Header - Biol.Unit 2
Biol.Unit 3 (59 KB)
Header - Biol.Unit 3
Biol.Unit 4 (59 KB)
Header - Biol.Unit 4
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