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2DUP
Asym. Unit
Info
Asym.Unit (89 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (42 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VIP36 EXOPLASMIC/LUMENAL DOMAIN, METAL-FREE FORM
Authors
:
T. Satoh, N. P. Cowieson, R. Kato, S. Wakatsuki
Date
:
25 Jul 06 (Deposition) - 24 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta Sandwich, Carbohydrate Binding Protein, Cargo Receptor, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Satoh, N. P. Cowieson, W. Hakamata, H. Ideo, K. Fukushima, M. Kurihara, R. Kato, K. Yamashita, S. Wakatsuki
Structural Basis For Recognition Of High Mannose Type Glycoproteins By Mammalian Transport Lectin Vip36
J. Biol. Chem. V. 282 28246 2007
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
CL
4
Ligand/Ion
CHLORIDE ION
3
GOL
3
Ligand/Ion
GLYCEROL
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:162 , TYR A:164 , ASN A:166 , ASP A:193 , HOH A:328 , HOH A:359
BINDING SITE FOR RESIDUE CA A 1
2
AC2
SOFTWARE
ARG A:56 , ILE A:61 , GLN A:65
BINDING SITE FOR RESIDUE CL A 2
3
AC3
SOFTWARE
ARG B:56 , ILE B:61 , GLY B:66
BINDING SITE FOR RESIDUE CL B 3
4
AC4
SOFTWARE
ARG A:209 , ASP A:210 , HIS A:211
BINDING SITE FOR RESIDUE CL A 4
5
AC5
SOFTWARE
ARG B:209 , ASP B:210 , HIS B:211
BINDING SITE FOR RESIDUE CL B 5
6
AC6
SOFTWARE
ASP B:131 , TYR B:164 , GLY B:260 , ASP B:261 , LEU B:262
BINDING SITE FOR RESIDUE GOL B 6
7
AC7
SOFTWARE
ASP A:131 , TYR A:164 , ASN A:166 , GLY A:260 , ASP A:261 , LEU A:262 , LEU B:128
BINDING SITE FOR RESIDUE GOL A 7
8
AC8
SOFTWARE
VAL A:181 , LEU A:186 , THR A:197 , LEU A:199 , ARG A:223
BINDING SITE FOR RESIDUE GOL A 8
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: L_LECTIN_LIKE (A:52-276)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
L_LECTIN_LIKE
PS51328
L-type lectin-like (leguminous) domain profile.
LMAN2_CANLF
52-276
1
A:52-276
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Exons
(7, 14)
Info
All Exons
Exon 1.1 (A:52-67 | B:53-67)
Exon 1.2 (A:67-106 | B:67-106)
Exon 1.3 (A:107-146 | B:107-146)
Exon 1.4 (A:146-172 | B:146-172)
Exon 1.5 (A:173-226 | B:173-226)
Exon 1.6 (A:227-265 | B:227-265)
Exon 1.7 (A:265-301 (gaps) | B:265-299 (gaps...)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSCAFT00000026045
1
ENSCAFE00000178415
chr4:
39194254-39194478
225
LMAN2_CANLF
1-67
67
2
A:52-67
B:53-67
16
15
1.2
ENSCAFT00000026045
2
ENSCAFE00000178417
chr4:
39194651-39194769
119
LMAN2_CANLF
67-106
40
2
A:67-106
B:67-106
40
40
1.3
ENSCAFT00000026045
3
ENSCAFE00000178420
chr4:
39207033-39207150
118
LMAN2_CANLF
107-146
40
2
A:107-146
B:107-146
40
40
1.4
ENSCAFT00000026045
4
ENSCAFE00000178423
chr4:
39208399-39208478
80
LMAN2_CANLF
146-172
27
2
A:146-172
B:146-172
27
27
1.5
ENSCAFT00000026045
5
ENSCAFE00000178425
chr4:
39208659-39208820
162
LMAN2_CANLF
173-226
54
2
A:173-226
B:173-226
54
54
1.6
ENSCAFT00000026045
6
ENSCAFE00000178428
chr4:
39208918-39209032
115
LMAN2_CANLF
227-265
39
2
A:227-265
B:227-265
39
39
1.7
ENSCAFT00000026045
7
ENSCAFE00000178429
chr4:
39212425-39212544
120
LMAN2_CANLF
265-305
41
2
A:265-301 (gaps)
B:265-299 (gaps)
37
35
1.8
ENSCAFT00000026045
8
ENSCAFE00000178432
chr4:
39214237-39214921
685
LMAN2_CANLF
305-357
53
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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all PFAM domains
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Asym.Unit (89 KB)
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