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2DUC
Asym. Unit
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Asym.Unit (109 KB)
Biol.Unit 1 (106 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SARS CORONAVIRUS MAIN PROTEINASE(3CLPRO)
Authors
:
H. Wang, Y. T. Kim, T. Muramatsu, C. Takemoto, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
21 Jul 06 (Deposition) - 24 Jul 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Sars Coronavirus Main Proteinase, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Wang, Y. T. Kim, T. Muramatsu, C. Takemoto, M. Shirouzu, S. Yokoyama
Crystal Structure Of Sars Coronavirus Main Proteinase(3Clpro)
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_R1AB_CVHSA_047 (Q189P, chain A/B, )
2: VAR_R1A_CVHSA_047 (Q189P, chain A/B, )
3: VAR_R1AB_CVHSA_048 (D248E, chain A/B, )
4: VAR_R1A_CVHSA_048 (D248E, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_R1AB_CVHSA_047
*
Q
3429
P
R1AB_CVHSA
---
---
A/B
Q
189
P
2
UniProt
VAR_R1A_CVHSA_047
*
Q
3429
P
R1A_CVHSA
---
---
A/B
Q
189
P
3
UniProt
VAR_R1AB_CVHSA_048
*
D
3488
E
R1AB_CVHSA
---
---
A/B
D
248
E
4
UniProt
VAR_R1A_CVHSA_048
*
D
3488
E
R1A_CVHSA
---
---
A/B
D
248
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: M_PRO (A:1-306,B:1-306,A:1-306,B:1-306)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
M_PRO
PS51442
Coronavirus main protease (M-pro) domain profile.
R1A_CVHSA
3241-3546
2
A:1-306
B:1-306
R1AB_CVHSA
3241-3546
2
A:1-306
B:1-306
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SCOP Domains
(1, 2)
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1a: SCOP_d2duca_ (A:)
1b: SCOP_d2ducb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Viral cysteine protease of trypsin fold
(145)
Protein domain
:
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)
(75)
SARS coronavirus [TaxId: 227859]
(65)
1a
d2duca_
A:
1b
d2ducb_
B:
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2ducA03 (A:198-301)
1b: CATH_2ducB03 (B:198-301)
2a: CATH_2ducA01 (A:1-14,A:100-197)
2b: CATH_2ducB01 (B:1-14,B:100-197)
2c: CATH_2ducA02 (A:15-99)
2d: CATH_2ducB02 (B:15-99)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
main proteinase (3clpro) structure, domain 3
(38)
Homologous Superfamily
:
main proteinase (3clpro) structure, domain 3
(38)
Sars coronavirus. Organism_taxid: 227859. Expression_system_vector_type: plasmid.
(1)
1a
2ducA03
A:198-301
1b
2ducB03
B:198-301
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Sars coronavirus. Organism_taxid: 227859. Expression_system_vector_type: plasmid.
(1)
2a
2ducA01
A:1-14,A:100-197
2b
2ducB01
B:1-14,B:100-197
2c
2ducA02
A:15-99
2d
2ducB02
B:15-99
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