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2DT1
Asym. Unit
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Asym.Unit (71 KB)
Biol.Unit 1 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF GOAT SIGNALLING PROTEIN WITH TETRASACCHARIDE AT 2.09 A RESOLUTION
Authors
:
J. Kumar, A. S. Ethayathulla, D. B. Srivastava, N. Singh, S. Sharma, A. B P. Kaur, T. P. Singh
Date
:
09 Jul 06 (Deposition) - 01 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Spg-40, Tetrasaccharide, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Kumar, A. S. Ethayathulla, D. B. Srivastava, N. Singh, S. Sharma, P. Kaur, A. Srinivasan, T. P. Singh
Carbohydrate-Binding Properties Of Goat Secretory Glycoprotein (Spg-40) And Its Functional Implications: Structures Of The Native Glycoprotein And Its Four Complexe With Chitin-Like Oligosaccharides
Acta Crystallogr. , Sect. D V. 63 437 2007
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
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No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:39 , ILE A:40 , SER A:41 , ARG A:84 , NDG A:364 , HOH A:459
BINDING SITE FOR RESIDUE NAG A 363
2
AC2
SOFTWARE
NAG A:363 , BMA A:365
BINDING SITE FOR RESIDUE NDG A 364
3
AC3
SOFTWARE
NDG A:364
BINDING SITE FOR RESIDUE BMA A 365
4
AC4
SOFTWARE
TRP A:10 , PHE A:37 , GLY A:77 , TRP A:78 , ASN A:79 , GLU A:269 , TRP A:331 , NAG A:367 , HOH A:434
BINDING SITE FOR RESIDUE NAG A 366
5
AC5
SOFTWARE
TRP A:10 , TRP A:48 , ASN A:79 , GLU A:269 , NAG A:366 , NAG A:368 , HOH A:372 , HOH A:550
BINDING SITE FOR RESIDUE NAG A 367
6
AC6
SOFTWARE
TRP A:10 , TYR A:13 , GLU A:49 , NAG A:367 , NAG A:369
BINDING SITE FOR RESIDUE NAG A 368
7
AC7
SOFTWARE
GLU A:49 , TRP A:50 , NAG A:368 , HOH A:558
BINDING SITE FOR RESIDUE NAG A 369
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2dt1a2 (A:240-307)
2a: SCOP_d2dt1a1 (A:1-239,A:308-362)
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
Chitinase insertion domain
(107)
Family
:
Chitinase insertion domain
(107)
Protein domain
:
Signal processing protein (SPC-40, MGP-40)
(37)
Goat (Capra hircus) [TaxId: 9925]
(14)
1a
d2dt1a2
A:240-307
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Type II chitinase
(131)
Protein domain
:
Signal processing protein (SPC-40, MGP-40)
(37)
Goat (Capra hircus) [TaxId: 9925]
(14)
2a
d2dt1a1
A:1-239,A:308-362
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2dt1A01 (A:1-239,A:308-362)
2a: CATH_2dt1A02 (A:240-307)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Goat (Capra hircus)
(14)
1a
2dt1A01
A:1-239,A:308-362
Architecture
:
Roll
(3276)
Topology
:
Chitinase A; domain 3
(225)
Homologous Superfamily
:
[code=3.10.50.10, no name defined]
(121)
Goat (Capra hircus)
(14)
2a
2dt1A02
A:240-307
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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