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2DSA
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (68 KB)
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(1)
Title
:
TERNARY COMPLEX OF BPHK, A BACTERIAL GST
Authors
:
E. I. Tocheva, M. E. P. Murphy
Date
:
24 Jun 06 (Deposition) - 22 Aug 06 (Release) - 07 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Glutathione S-Transferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. I. Tocheva, P. D. Fortin, L. D. Eltis, M. E. P. Murphy
Structures Of Ternary Complexes Of Bphk, A Bacterial Glutathione S-Transferase That Reductively Dechlorinates Polychlorinated Biphenyl Metabolites
J. Biol. Chem. V. 281 30933 2006
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
1b: GLUTATHIONE (GSHb)
1c: GLUTATHIONE (GSHc)
1d: GLUTATHIONE (GSHd)
2a: (2Z,4E)-2-HYDROXY-6-OXO-6-PHENYLHE... (HPXa)
2b: (2Z,4E)-2-HYDROXY-6-OXO-6-PHENYLHE... (HPXb)
2c: (2Z,4E)-2-HYDROXY-6-OXO-6-PHENYLHE... (HPXc)
2d: (2Z,4E)-2-HYDROXY-6-OXO-6-PHENYLHE... (HPXd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GSH
4
Ligand/Ion
GLUTATHIONE
2
HPX
4
Ligand/Ion
(2Z,4E)-2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:10 , LEU A:32 , LYS A:35 , TYR A:51 , VAL A:52 , GLU A:65 , GLY A:66 , HIS A:106 , LYS A:107 , HPX A:1225 , HOH A:1226 , HOH A:1232 , HOH A:1239 , ASN B:99 , SER B:103 , GLU B:104
BINDING SITE FOR RESIDUE GSH A 1224
2
AC2
SOFTWARE
ASN A:99 , SER A:103 , GLU A:104 , ALA B:9 , CYS B:10 , LEU B:32 , TYR B:51 , VAL B:52 , GLU B:65 , GLY B:66 , HIS B:106 , HPX B:2225 , HOH B:2228 , HOH B:2243 , HOH B:2244
BINDING SITE FOR RESIDUE GSH B 2224
3
AC3
SOFTWARE
CYS C:10 , LYS C:35 , TYR C:51 , VAL C:52 , GLU C:65 , GLY C:66 , HIS C:106 , HPX C:3225 , HOH C:3226 , HOH C:3233 , HOH C:3241 , HOH C:3274 , ASN D:99 , SER D:103 , GLU D:104
BINDING SITE FOR RESIDUE GSH C 3224
4
AC4
SOFTWARE
ASN C:99 , SER C:103 , GLU C:104 , CYS D:10 , LEU D:32 , LYS D:35 , TYR D:51 , VAL D:52 , GLU D:65 , GLY D:66 , HIS D:106 , HPX D:4225 , HOH D:4229 , HOH D:4239
BINDING SITE FOR RESIDUE GSH D 4224
5
AC5
SOFTWARE
PRO A:7 , GLY A:8 , HIS A:106 , SER A:110 , PHE A:113 , TRP A:164 , TYR A:167 , GSH A:1224
BINDING SITE FOR RESIDUE HPX A 1225
6
AC6
SOFTWARE
PRO B:7 , GLY B:8 , ALA B:9 , SER B:39 , HIS B:106 , SER B:110 , TYR B:167 , GSH B:2224
BINDING SITE FOR RESIDUE HPX B 2225
7
AC7
SOFTWARE
PRO C:7 , GLY C:8 , ALA C:9 , HIS C:106 , SER C:110 , PHE C:113 , TRP C:164 , TYR C:167 , GSH C:3224
BINDING SITE FOR RESIDUE HPX C 3225
8
AC8
SOFTWARE
PRO D:7 , GLY D:8 , ALA D:9 , SER D:39 , HIS D:106 , SER D:110 , TRP D:164 , TYR D:167 , GSH D:4224
BINDING SITE FOR RESIDUE HPX D 4225
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2dsaa2 (A:81-200)
1b: SCOP_d2dsab2 (B:81-200)
1c: SCOP_d2dsac2 (C:81-200)
1d: SCOP_d2dsad2 (D:81-200)
2a: SCOP_d2dsaa1 (A:1-80)
2b: SCOP_d2dsab1 (B:1-80)
2c: SCOP_d2dsac1 (C:1-80)
2d: SCOP_d2dsad1 (D:1-80)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
automated matches
(86)
Protein domain
:
automated matches
(86)
Burkholderia xenovorans [TaxId: 266265]
(2)
1a
d2dsaa2
A:81-200
1b
d2dsab2
B:81-200
1c
d2dsac2
C:81-200
1d
d2dsad2
D:81-200
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Burkholderia xenovorans [TaxId: 266265]
(2)
2a
d2dsaa1
A:1-80
2b
d2dsab1
B:1-80
2c
d2dsac1
C:1-80
2d
d2dsad1
D:1-80
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2dsaA01 (A:1-82,A:189-200)
1b: CATH_2dsaB01 (B:1-82,B:189-200)
1c: CATH_2dsaC01 (C:1-82,C:189-200)
1d: CATH_2dsaD01 (D:1-82,D:189-200)
2a: CATH_2dsaA02 (A:83-188)
2b: CATH_2dsaB02 (B:83-188)
2c: CATH_2dsaC02 (C:83-188)
2d: CATH_2dsaD02 (D:83-188)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Burkholderia xenovorans lb400. Organism_taxid: 266265. Strain: lb400.
(2)
1a
2dsaA01
A:1-82,A:189-200
1b
2dsaB01
B:1-82,B:189-200
1c
2dsaC01
C:1-82,C:189-200
1d
2dsaD01
D:1-82,D:189-200
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Burkholderia xenovorans lb400. Organism_taxid: 266265. Strain: lb400.
(2)
2a
2dsaA02
A:83-188
2b
2dsaB02
B:83-188
2c
2dsaC02
C:83-188
2d
2dsaD02
D:83-188
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (138 KB)
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