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2DO4
Asym. Unit
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Asym.Unit (509 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN OF SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNIZED BY T CELLS 3
Authors
:
W. Tanabe, S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
27 Apr 06 (Deposition) - 17 Apr 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rrm Domaim, Rdb, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The Rna Binding Domain Of Squamous Cell Carcinoma Antigen Recognized By T Cells 3
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RRM (A:790-790|A:801-877)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
SART3_HUMAN
704-782
801-878
2
A:790-790
A:801-877
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Exons
(4, 4)
Info
All Exons
Exon 1.16a (A:784-790 (gaps))
Exon 1.17 (A:791-841)
Exon 1.18 (A:842-877)
Exon 1.19 (A:878-883)
View:
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All Exon Boundaries
1: Boundary 1.15/1.16a
2: Boundary 1.16a/1.17
3: Boundary 1.17/1.18
4: Boundary 1.18/1.19
5: Boundary 1.19/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000228284
1a
ENSE00000818387
chr12:
108955165-108954619
547
SART3_HUMAN
1-104
104
0
-
-
1.2
ENST00000228284
2
ENSE00001273661
chr12:
108942990-108942864
127
SART3_HUMAN
105-147
43
0
-
-
1.3
ENST00000228284
3
ENSE00001273655
chr12:
108941767-108941663
105
SART3_HUMAN
147-182
36
0
-
-
1.4
ENST00000228284
4
ENSE00000754642
chr12:
108939099-108938915
185
SART3_HUMAN
182-243
62
0
-
-
1.5
ENST00000228284
5
ENSE00000754641
chr12:
108938254-108938203
52
SART3_HUMAN
244-261
18
0
-
-
1.6
ENST00000228284
6
ENSE00000754639
chr12:
108936928-108936804
125
SART3_HUMAN
261-302
42
0
-
-
1.7b
ENST00000228284
7b
ENSE00000754638
chr12:
108932865-108932710
156
SART3_HUMAN
303-354
52
0
-
-
1.8
ENST00000228284
8
ENSE00001722831
chr12:
108931979-108931841
139
SART3_HUMAN
355-401
47
0
-
-
1.9
ENST00000228284
9
ENSE00001725747
chr12:
108931371-108931264
108
SART3_HUMAN
401-437
37
0
-
-
1.10
ENST00000228284
10
ENSE00001742338
chr12:
108930561-108930484
78
SART3_HUMAN
437-463
27
0
-
-
1.11
ENST00000228284
11
ENSE00001596089
chr12:
108930348-108930290
59
SART3_HUMAN
463-482
20
0
-
-
1.12
ENST00000228284
12
ENSE00001621822
chr12:
108929244-108929135
110
SART3_HUMAN
483-519
37
0
-
-
1.13
ENST00000228284
13
ENSE00001666520
chr12:
108926110-108925998
113
SART3_HUMAN
519-557
39
0
-
-
1.14
ENST00000228284
14
ENSE00001612379
chr12:
108925057-108924981
77
SART3_HUMAN
557-582
26
0
-
-
1.15
ENST00000228284
15
ENSE00001653451
chr12:
108924087-108923919
169
SART3_HUMAN
583-639
57
0
-
-
1.16a
ENST00000228284
16a
ENSE00001658396
chr12:
108920330-108919876
455
SART3_HUMAN
639-790
152
1
A:784-790 (gaps)
33
1.17
ENST00000228284
17
ENSE00001769536
chr12:
108919386-108919234
153
SART3_HUMAN
791-841
51
1
A:791-841
51
1.18
ENST00000228284
18
ENSE00001744061
chr12:
108918283-108918093
191
SART3_HUMAN
842-905
64
1
A:842-877
36
1.19
ENST00000228284
19
ENSE00001720680
chr12:
108917411-108915992
1420
SART3_HUMAN
905-963
59
1
A:878-883
6
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SCOP Domains
(1, 1)
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1a: SCOP_d2do4a_ (A:)
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Class
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Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
automated matches
(67)
Protein domain
:
automated matches
(67)
Human (Homo sapiens) [TaxId: 9606]
(56)
1a
d2do4a_
A:
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Chain A
Asymmetric Unit 1
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