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2DNO
Asym. Unit
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Asym.Unit (499 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN TRINUCLEOTIDE REPEAT CONTAINING 4 VARIANT
Authors
:
K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
26 Apr 06 (Deposition) - 26 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rrm Domain, Rbd, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of Rna Binding Domain In Trinucleotide Repeat Containing 4 Variant
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (-|A:71-151|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
CELF3_HUMAN
7-88
95-175
380-458
1
-
A:71-151
-
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Exons
(7, 7)
Info
All Exons
Exon 1.2 (A:59-59)
Exon 1.3b (A:60-69 (gaps))
Exon 1.4a (A:69-112)
Exon 1.5 (A:112-138)
Exon 1.6 (A:139-156)
Exon 1.7b (A:157-160)
Exon 1.7d (A:160-160)
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All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3b
3: Boundary 1.3b/1.4a
4: Boundary 1.4a/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7b
7: Boundary 1.7b/1.7d
8: Boundary 1.7d/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000290583
1a
ENSE00002166860
chr1:
151689290-151688352
939
CELF3_HUMAN
1-49
49
0
-
-
1.2
ENST00000290583
2
ENSE00001710016
chr1:
151687152-151687070
83
CELF3_HUMAN
49-76
28
1
A:59-59
1
1.3b
ENST00000290583
3b
ENSE00001793770
chr1:
151682267-151682219
49
CELF3_HUMAN
77-93
17
1
A:60-69 (gaps)
17
1.4a
ENST00000290583
4a
ENSE00001687651
chr1:
151681824-151681696
129
CELF3_HUMAN
93-136
44
1
A:69-112
44
1.5
ENST00000290583
5
ENSE00001755084
chr1:
151681553-151681474
80
CELF3_HUMAN
136-162
27
1
A:112-138
27
1.6
ENST00000290583
6
ENSE00001776256
chr1:
151680411-151680268
144
CELF3_HUMAN
163-210
48
1
A:139-156
18
1.7b
ENST00000290583
7b
ENSE00001045428
chr1:
151680124-151679983
142
CELF3_HUMAN
211-258
48
1
A:157-160
4
1.7d
ENST00000290583
7d
ENSE00001148654
chr1:
151679770-151679621
150
CELF3_HUMAN
258-308
51
1
A:160-160
1
1.8
ENST00000290583
8
ENSE00001148643
chr1:
151679210-151679145
66
CELF3_HUMAN
308-330
23
0
-
-
1.9a
ENST00000290583
9a
ENSE00001148638
chr1:
151678837-151678700
138
CELF3_HUMAN
330-376
47
0
-
-
1.10
ENST00000290583
10
ENSE00001148626
chr1:
151678441-151678298
144
CELF3_HUMAN
376-424
49
0
-
-
1.11
ENST00000290583
11
ENSE00001045410
chr1:
151677644-151677507
138
CELF3_HUMAN
424-465
42
0
-
-
1.12b
ENST00000290583
12b
ENSE00001948724
chr1:
151675924-151674881
1044
CELF3_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2dnoa_ (A:)
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
automated matches
(67)
Protein domain
:
automated matches
(67)
Human (Homo sapiens) [TaxId: 9606]
(56)
1a
d2dnoa_
A:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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