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2DNC
Asym. Unit
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Asym.Unit (443 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF RSGI RUH-054, A LIPOYL DOMAIN FROM HUMAN 2-OXOACID DEHYDROGENASE
Authors
:
A. Z. M. Ruhul Momen, H. Hirota, F. Hayashi, C. Kurosaki, M. Yoshida, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
25 Apr 06 (Deposition) - 25 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Lipoic Acid, Lipoyl Domain, 2-Oxoacid Dehydrogenase, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Z. M. Ruhul Momen, H. Hirota, F. Hayashi, C. Kurosaki, M. Yoshida, S. Yokoyama
Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_046620 (T52A, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_046620
T
101
A
ODPX_HUMAN
Polymorphism
11539202
A
T
52
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: BIOTINYL_LIPOYL (A:8-83)
2: LIPOYL (A:32-61)
3: PSBD (A:96-98)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BIOTINYL_LIPOYL
PS50968
Biotinyl/lipoyl domain profile.
ODPX_HUMAN
56-132
1
A:8-83
2
LIPOYL
PS00189
2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
ODPX_HUMAN
81-110
1
A:32-61
3
PSBD
PS51826
Peripheral subunit-binding (PSBD) domain profile.
ODPX_HUMAN
183-220
1
A:96-98
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Exons
(5, 5)
Info
All Exons
Exon 1.3a (A:1-7)
Exon 1.4 (A:8-32)
Exon 1.5 (A:32-65)
Exon 1.6 (A:66-95)
Exon 1.7c (A:96-98)
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7c
6: Boundary 1.7c/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000227868
3a
ENSE00000824440
chr11:
34938119-34938362
244
ODPX_HUMAN
1-54
54
1
A:1-7
7
1.4
ENST00000227868
4
ENSE00000710349
chr11:
34952951-34953031
81
ODPX_HUMAN
54-81
28
1
A:8-32
25
1.5
ENST00000227868
5
ENSE00001150239
chr11:
34969053-34969153
101
ODPX_HUMAN
81-114
34
1
A:32-65
34
1.6
ENST00000227868
6
ENSE00001150231
chr11:
34978931-34979130
200
ODPX_HUMAN
115-181
67
1
A:66-95
30
1.7c
ENST00000227868
7c
ENSE00001150226
chr11:
34981967-34982065
99
ODPX_HUMAN
181-214
34
1
A:96-98
3
1.8
ENST00000227868
8
ENSE00001150220
chr11:
34988187-34988361
175
ODPX_HUMAN
214-272
59
0
-
-
1.9
ENST00000227868
9
ENSE00001330369
chr11:
34991686-34991833
148
ODPX_HUMAN
273-322
50
0
-
-
1.11b
ENST00000227868
11b
ENSE00000710371
chr11:
34999671-34999729
59
ODPX_HUMAN
322-341
20
0
-
-
1.12a
ENST00000227868
12a
ENSE00000710373
chr11:
35006117-35006275
159
ODPX_HUMAN
342-394
53
0
-
-
1.13
ENST00000227868
13
ENSE00000710375
chr11:
35013862-35013926
65
ODPX_HUMAN
395-416
22
0
-
-
1.14c
ENST00000227868
14c
ENSE00002154149
chr11:
35016461-35017518
1058
ODPX_HUMAN
416-501
86
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2dnca_ (A:)
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Class
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All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Single hybrid motif
(49)
Family
:
automated matches
(9)
Protein domain
:
automated matches
(9)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2dnca_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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