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2DMY
Asym. Unit
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Asym.Unit (481 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF DSRM DOMAIN IN SPERMATID PERINUCLEAR RNA-BIND PROTEIN
Authors
:
S. Kadirvel, F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
24 Apr 06 (Deposition) - 24 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Dsrm Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Kadirvel, F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama
Solution Structure Of Dsrm Domain In Spermatid Perinuclear Rna-Bind Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: DS_RBD (A:17-83|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DS_RBD
PS50137
Double stranded RNA-binding domain (dsRBD) profile.
STRBP_HUMAN
387-453
510-576
1
A:17-83
-
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Exons
(4, 4)
Info
All Exons
Exon 1.16 (A:1-2)
Exon 1.17 (A:2-10 (gaps))
Exon 1.18 (A:10-76)
Exon 1.19 (A:77-97)
View:
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All Exon Boundaries
1: Boundary 1.15/1.16
2: Boundary 1.16/1.17
3: Boundary 1.17/1.18
4: Boundary 1.18/1.19
5: Boundary 1.19/1.20a
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000348403
1c
ENSE00001461091
chr9:
126030843-126030715
129
STRBP_HUMAN
-
0
0
-
-
1.2
ENST00000348403
2
ENSE00001327887
chr9:
125999245-125999109
137
STRBP_HUMAN
-
0
0
-
-
1.6b
ENST00000348403
6b
ENSE00002156923
chr9:
125946577-125946411
167
STRBP_HUMAN
1-1
1
0
-
-
1.8
ENST00000348403
8
ENSE00002182268
chr9:
125941506-125941286
221
STRBP_HUMAN
2-75
74
0
-
-
1.9a
ENST00000348403
9a
ENSE00001287138
chr9:
125936121-125935956
166
STRBP_HUMAN
75-130
56
0
-
-
1.10
ENST00000348403
10
ENSE00001769379
chr9:
125932325-125932181
145
STRBP_HUMAN
131-179
49
0
-
-
1.12
ENST00000348403
12
ENSE00001751996
chr9:
125923347-125923256
92
STRBP_HUMAN
179-209
31
0
-
-
1.13
ENST00000348403
13
ENSE00001763512
chr9:
125922741-125922646
96
STRBP_HUMAN
210-241
32
0
-
-
1.14
ENST00000348403
14
ENSE00001784370
chr9:
125921486-125921375
112
STRBP_HUMAN
242-279
38
0
-
-
1.15
ENST00000348403
15
ENSE00001630656
chr9:
125920708-125920611
98
STRBP_HUMAN
279-311
33
0
-
-
1.16
ENST00000348403
16
ENSE00001595442
chr9:
125920402-125920291
112
STRBP_HUMAN
312-349
38
1
A:1-2
2
1.17
ENST00000348403
17
ENSE00001748247
chr9:
125910149-125910057
93
STRBP_HUMAN
349-380
32
1
A:2-10 (gaps)
32
1.18
ENST00000348403
18
ENSE00001739862
chr9:
125909333-125909134
200
STRBP_HUMAN
380-446
67
1
A:10-76
67
1.19
ENST00000348403
19
ENSE00001768279
chr9:
125901966-125901808
159
STRBP_HUMAN
447-499
53
1
A:77-97
21
1.20a
ENST00000348403
20a
ENSE00001687364
chr9:
125898794-125898660
135
STRBP_HUMAN
500-544
45
0
-
-
1.21a
ENST00000348403
21a
ENSE00001722654
chr9:
125898460-125898320
141
STRBP_HUMAN
545-591
47
0
-
-
1.22a
ENST00000348403
22a
ENSE00001735311
chr9:
125895247-125895124
124
STRBP_HUMAN
592-633
42
0
-
-
1.23
ENST00000348403
23
ENSE00001795039
chr9:
125890537-125890493
45
STRBP_HUMAN
633-648
16
0
-
-
1.24d
ENST00000348403
24d
ENSE00001728022
chr9:
125887952-125886990
963
STRBP_HUMAN
648-672
25
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2dmya1 (A:8-91)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
dsRBD-like
(111)
Superfamily
:
dsRNA-binding domain-like
(98)
Family
:
Double-stranded RNA-binding domain (dsRBD)
(34)
Protein domain
:
Spermatid perinuclear RNA-binding protein
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2dmya1
A:8-91
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CATH Domains
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Chain A
Asymmetric Unit 1
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