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2DM8
Asym. Unit
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Asym.Unit (572 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE EIGHTH PDZ DOMAIN OF HUMAN INAD-LIKE PROTEIN
Authors
:
K. Inoue, T. Nagashima, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
20 Apr 06 (Deposition) - 20 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Pdz Domain, Inad-Like Protein, Inadl Protein, Hinadl, Pals1- Associated Tight Junction Protein, Protein Associated To Tight Junctions, Inadl, Patj, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Inoue, T. Nagashima, F. Hayashi, S. Yokoyama
Solution Structure Of The Eighth Pdz Domain Of Human Inad-Like Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_027998 (A87P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_027998
A
1504
P
INADL_HUMAN
Polymorphism
13376115
A
A
87
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PDZ (-|-|-|-|-|-|-|A:20-103|A:112-116|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
INADL_HUMAN
134-221
248-328
365-453
553-639
686-758
1068-1160
1239-1322
1437-1520
1533-1615
1676-1762
2
-
-
-
-
-
-
-
A:20-103
A:112-116
-
[
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Exons
(5, 5)
Info
All Exons
Exon 1.35a (A:1-4 (gaps))
Exon 1.36 (A:5-42)
Exon 1.38 (A:43-70)
Exon 1.39a (A:71-113 (gaps))
Exon 1.40 (A:114-116)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.34/1.35a
2: Boundary 1.35a/1.36
3: Boundary 1.36/1.38
4: Boundary 1.38/1.39a
5: Boundary 1.39a/1.40
6: Boundary 1.40/1.41a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000371158
1
ENSE00001341045
chr1:
62208149-62208227
79
INADL_HUMAN
-
0
0
-
-
1.2
ENST00000371158
2
ENSE00002140234
chr1:
62228530-62228586
57
INADL_HUMAN
1-8
8
0
-
-
1.3
ENST00000371158
3
ENSE00001653283
chr1:
62228685-62228851
167
INADL_HUMAN
8-63
56
0
-
-
1.4
ENST00000371158
4
ENSE00001596231
chr1:
62231951-62232145
195
INADL_HUMAN
64-128
65
0
-
-
1.5
ENST00000371158
5
ENSE00001747515
chr1:
62234955-62235094
140
INADL_HUMAN
129-175
47
0
-
-
1.6
ENST00000371158
6
ENSE00001756534
chr1:
62237103-62237298
196
INADL_HUMAN
175-240
66
0
-
-
1.7
ENST00000371158
7
ENSE00001714688
chr1:
62240878-62241006
129
INADL_HUMAN
241-283
43
0
-
-
1.8
ENST00000371158
8
ENSE00001680186
chr1:
62253426-62253644
219
INADL_HUMAN
284-356
73
0
-
-
1.9
ENST00000371158
9
ENSE00001684863
chr1:
62257020-62257119
100
INADL_HUMAN
357-390
34
0
-
-
1.10
ENST00000371158
10
ENSE00001621384
chr1:
62261139-62261230
92
INADL_HUMAN
390-420
31
0
-
-
1.11
ENST00000371158
11
ENSE00001704241
chr1:
62262959-62263100
142
INADL_HUMAN
421-468
48
0
-
-
1.12
ENST00000371158
12
ENSE00001701190
chr1:
62267295-62267441
147
INADL_HUMAN
468-517
50
0
-
-
1.13a
ENST00000371158
13a
ENSE00001634823
chr1:
62271120-62271196
77
INADL_HUMAN
517-542
26
0
-
-
1.14
ENST00000371158
14
ENSE00001180884
chr1:
62274146-62274202
57
INADL_HUMAN
543-561
19
0
-
-
1.15
ENST00000371158
15
ENSE00001313645
chr1:
62288617-62288751
135
INADL_HUMAN
562-606
45
0
-
-
1.16
ENST00000371158
16
ENSE00001011133
chr1:
62293094-62293255
162
INADL_HUMAN
607-660
54
0
-
-
1.17
ENST00000371158
17
ENSE00001011140
chr1:
62299326-62299457
132
INADL_HUMAN
661-704
44
0
-
-
1.18
ENST00000371158
18
ENSE00001011138
chr1:
62321702-62321911
210
INADL_HUMAN
705-774
70
0
-
-
1.19
ENST00000371158
19
ENSE00001011136
chr1:
62327223-62327339
117
INADL_HUMAN
775-813
39
0
-
-
1.20a
ENST00000371158
20a
ENSE00001011158
chr1:
62329910-62330305
396
INADL_HUMAN
814-945
132
0
-
-
1.22a
ENST00000371158
22a
ENSE00001011157
chr1:
62340915-62341038
124
INADL_HUMAN
946-987
42
0
-
-
1.23
ENST00000371158
23
ENSE00001011142
chr1:
62349909-62350080
172
INADL_HUMAN
987-1044
58
0
-
-
1.24
ENST00000371158
24
ENSE00001011134
chr1:
62365255-62365326
72
INADL_HUMAN
1044-1068
25
0
-
-
1.25
ENST00000371158
25
ENSE00001011132
chr1:
62366954-62367131
178
INADL_HUMAN
1068-1127
60
0
-
-
1.26
ENST00000371158
26
ENSE00001011151
chr1:
62374044-62374154
111
INADL_HUMAN
1128-1164
37
0
-
-
1.27
ENST00000371158
27
ENSE00001011139
chr1:
62380259-62380336
78
INADL_HUMAN
1165-1190
26
0
-
-
1.28b
ENST00000371158
28b
ENSE00001011147
chr1:
62393402-62393501
100
INADL_HUMAN
1191-1224
34
0
-
-
1.30a
ENST00000371158
30a
ENSE00001170290
chr1:
62455840-62456036
197
INADL_HUMAN
1224-1289
66
0
-
-
1.32
ENST00000371158
32
ENSE00001011145
chr1:
62483528-62483619
92
INADL_HUMAN
1290-1320
31
0
-
-
1.33
ENST00000371158
33
ENSE00001011135
chr1:
62503649-62503721
73
INADL_HUMAN
1320-1344
25
0
-
-
1.34
ENST00000371158
34
ENSE00001066757
chr1:
62516638-62516730
93
INADL_HUMAN
1345-1375
31
0
-
-
1.35a
ENST00000371158
35a
ENSE00001066756
chr1:
62545122-62545239
118
INADL_HUMAN
1376-1415
40
1
A:1-4 (gaps)
13
1.36
ENST00000371158
36
ENSE00001066761
chr1:
62550187-62550320
134
INADL_HUMAN
1415-1459
45
1
A:5-42
38
1.38
ENST00000371158
38
ENSE00001066759
chr1:
62574109-62574192
84
INADL_HUMAN
1460-1487
28
1
A:43-70
28
1.39a
ENST00000371158
39a
ENSE00002161466
chr1:
62579725-62579918
194
INADL_HUMAN
1488-1552
65
1
A:71-113 (gaps)
55
1.40
ENST00000371158
40
ENSE00001775347
chr1:
62582204-62582351
148
INADL_HUMAN
1552-1601
50
1
A:114-116
3
1.41a
ENST00000371158
41a
ENSE00001639463
chr1:
62582804-62582890
87
INADL_HUMAN
1602-1630
29
0
-
-
1.42b
ENST00000371158
42b
ENSE00001668046
chr1:
62586853-62586967
115
INADL_HUMAN
1631-1669
39
0
-
-
1.43
ENST00000371158
43
ENSE00001794870
chr1:
62588693-62588730
38
INADL_HUMAN
1669-1681
13
0
-
-
1.44a
ENST00000371158
44a
ENSE00001618976
chr1:
62593644-62593766
123
INADL_HUMAN
1682-1722
41
0
-
-
1.45
ENST00000371158
45
ENSE00001716409
chr1:
62594513-62594617
105
INADL_HUMAN
1723-1757
35
0
-
-
1.46
ENST00000371158
46
ENSE00001721876
chr1:
62613956-62614062
107
INADL_HUMAN
1758-1793
36
0
-
-
1.48b
ENST00000371158
48b
ENSE00001714413
chr1:
62626580-62629592
3013
INADL_HUMAN
1793-1801
9
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2dm8a_ (A:)
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All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Human (Homo sapiens) [TaxId: 9606]
(71)
1a
d2dm8a_
A:
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