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2DLO
Asym. Unit
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Asym.Unit (393 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE SECOND LIM DOMAIN OF HUMAN THYROID RECEPTOR-INTERACTING PROTEIN 6
Authors
:
X. R. Qin, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
20 Apr 06 (Deposition) - 20 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Lim Domain, Thyroid Receptor Interacting Protein 6 (Trip6), Opa-Interacting Protein 1, Zyxin Related Protein 1 (Zrp-1), Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Cell Adhesion
(Keyword Search:
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Reference
:
X. R. Qin, F. Hayashi, S. Yokoyama
Solution Structure Of The Second Lim Domain Of Human Thyroid Receptor-Interacting Protein 6
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
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Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:18 , CYS A:21 , HIS A:38 , CYS A:41
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:44 , CYS A:47 , CYS A:66 , ASP A:69
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_050171 (S2I, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050171
V
230
I
TRIP6_HUMAN
Polymorphism
2075756
A
S
2
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: LIM_DOMAIN_1 (-|A:18-51)
2: LIM_DOMAIN_2 (A:16-75|A:8-14|A:77-81)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
TRIP6_HUMAN
279-314
339-372
1
-
A:18-51
2
LIM_DOMAIN_2
PS50023
LIM domain profile.
TRIP6_HUMAN
337-397
277-335
400-467
3
A:16-75
A:8-14
A:77-81
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Exons
(4, 4)
Info
All Exons
Exon 1.3b (A:1-7)
Exon 1.4e (A:8-12)
Exon 1.4i (A:13-72)
Exon 1.5b (A:72-81 (gaps))
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All Exon Boundaries
1: Boundary 1.2f/1.3b
2: Boundary 1.3b/1.4a
3: Boundary 1.4a/1.4e
4: Boundary 1.4e/1.4i
5: Boundary 1.4i/1.5b
6: Boundary 1.5b/1.6b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000200457
1a
ENSE00001917757
chr7:
100464760-100465228
469
TRIP6_HUMAN
1-37
37
0
-
-
1.2a
ENST00000200457
2a
ENSE00000710158
chr7:
100465483-100465610
128
TRIP6_HUMAN
37-79
43
0
-
-
1.2f
ENST00000200457
2f
ENSE00001748387
chr7:
100465730-100465855
126
TRIP6_HUMAN
80-121
42
0
-
-
1.3b
ENST00000200457
3b
ENSE00001746150
chr7:
100466117-100466488
372
TRIP6_HUMAN
122-245
124
1
A:1-7
7
1.4a
ENST00000200457
4a
ENSE00001633445
chr7:
100467992-100468085
94
TRIP6_HUMAN
246-277
32
0
-
-
1.4e
ENST00000200457
4e
ENSE00001701384
chr7:
100468196-100468365
170
TRIP6_HUMAN
277-333
57
1
A:8-12
5
1.4i
ENST00000200457
4i
ENSE00001781071
chr7:
100469165-100469343
179
TRIP6_HUMAN
334-393
60
1
A:13-72
60
1.5b
ENST00000200457
5b
ENSE00001630795
chr7:
100470246-100470366
121
TRIP6_HUMAN
393-433
41
1
A:72-81 (gaps)
19
1.6b
ENST00000200457
6b
ENSE00001833240
chr7:
100470794-100471076
283
TRIP6_HUMAN
434-476
43
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2dloa1 (A:8-42)
1b: SCOP_d2dloa2 (A:43-75)
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Organisms
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(
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Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
LIM domain
(37)
Protein domain
:
Thyroid receptor interacting protein 6, TRIP6
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2dloa1
A:8-42
1b
d2dloa2
A:43-75
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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