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2DL6
Asym. Unit
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Asym.Unit (437 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE FIRST BRK DOMAIN FROM HUMAN CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 8
Authors
:
T. Suetake, T. Nagashima, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
17 Apr 06 (Deposition) - 17 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Brk, Chd8, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Suetake, T. Nagashima, F. Hayashi, S. Yokoyama
Solution Structure Of The First Brk Domain From Human Chromodomain-Helicase-Dna-Binding Protein 8
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
(1, 1)
Info
All Exons
Exon 1.40 (A:1-80 (gaps))
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All Exon Boundaries
1: Boundary 1.39/1.40
2: Boundary 1.40/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000399982
3
ENSE00001541186
chr14:
21899397-21898960
438
CHD8_HUMAN
1-146
146
0
-
-
1.5
ENST00000399982
5
ENSE00001424069
chr14:
21897494-21897123
372
CHD8_HUMAN
147-270
124
0
-
-
1.6
ENST00000399982
6
ENSE00001422532
chr14:
21896413-21896028
386
CHD8_HUMAN
271-399
129
0
-
-
1.7
ENST00000399982
7
ENSE00001418360
chr14:
21894401-21894287
115
CHD8_HUMAN
399-437
39
0
-
-
1.8
ENST00000399982
8
ENSE00000653248
chr14:
21884066-21883884
183
CHD8_HUMAN
438-498
61
0
-
-
1.9
ENST00000399982
9
ENSE00000653240
chr14:
21883801-21883733
69
CHD8_HUMAN
499-521
23
0
-
-
1.10
ENST00000399982
10
ENSE00000653233
chr14:
21883152-21883097
56
CHD8_HUMAN
522-540
19
0
-
-
1.11
ENST00000399982
11
ENSE00000653232
chr14:
21882577-21882460
118
CHD8_HUMAN
540-579
40
0
-
-
1.12
ENST00000399982
12
ENSE00000940587
chr14:
21881155-21881072
84
CHD8_HUMAN
580-607
28
0
-
-
1.13
ENST00000399982
13
ENSE00000930049
chr14:
21878147-21878010
138
CHD8_HUMAN
608-653
46
0
-
-
1.14
ENST00000399982
14
ENSE00000889099
chr14:
21876984-21876863
122
CHD8_HUMAN
654-694
41
0
-
-
1.15
ENST00000399982
15
ENSE00000889098
chr14:
21876714-21876471
244
CHD8_HUMAN
694-775
82
0
-
-
1.16
ENST00000399982
16
ENSE00000889097
chr14:
21875191-21875015
177
CHD8_HUMAN
776-834
59
0
-
-
1.17
ENST00000399982
17
ENSE00001673287
chr14:
21874023-21873880
144
CHD8_HUMAN
835-882
48
0
-
-
1.18
ENST00000399982
18
ENSE00001737016
chr14:
21873623-21873368
256
CHD8_HUMAN
883-968
86
0
-
-
1.19
ENST00000399982
19
ENSE00001207501
chr14:
21871822-21871612
211
CHD8_HUMAN
968-1038
71
0
-
-
1.20
ENST00000399982
20
ENSE00001739488
chr14:
21871371-21871176
196
CHD8_HUMAN
1038-1103
66
0
-
-
1.21
ENST00000399982
21
ENSE00000653225
chr14:
21870662-21870495
168
CHD8_HUMAN
1104-1159
56
0
-
-
1.22
ENST00000399982
22
ENSE00000653224
chr14:
21870295-21870116
180
CHD8_HUMAN
1160-1219
60
0
-
-
1.23
ENST00000399982
23
ENSE00001207619
chr14:
21869672-21869562
111
CHD8_HUMAN
1220-1256
37
0
-
-
1.24
ENST00000399982
24
ENSE00000653222
chr14:
21869230-21869034
197
CHD8_HUMAN
1257-1322
66
0
-
-
1.25
ENST00000399982
25
ENSE00000889094
chr14:
21868771-21868572
200
CHD8_HUMAN
1322-1389
68
0
-
-
1.26
ENST00000399982
26
ENSE00000889093
chr14:
21868466-21868310
157
CHD8_HUMAN
1389-1441
53
0
-
-
1.27
ENST00000399982
27
ENSE00000653219
chr14:
21868229-21868140
90
CHD8_HUMAN
1441-1471
31
0
-
-
1.28
ENST00000399982
28
ENSE00000653218
chr14:
21867864-21867761
104
CHD8_HUMAN
1471-1506
36
0
-
-
1.29
ENST00000399982
29
ENSE00000653217
chr14:
21866111-21865982
130
CHD8_HUMAN
1506-1549
44
0
-
-
1.30
ENST00000399982
30
ENSE00000653216
chr14:
21864051-21863976
76
CHD8_HUMAN
1549-1574
26
0
-
-
1.31
ENST00000399982
31
ENSE00000889092
chr14:
21863511-21863457
55
CHD8_HUMAN
1575-1593
19
0
-
-
1.32
ENST00000399982
32
ENSE00000889091
chr14:
21863278-21863071
208
CHD8_HUMAN
1593-1662
70
0
-
-
1.33
ENST00000399982
33
ENSE00001096837
chr14:
21862644-21862436
209
CHD8_HUMAN
1662-1732
71
0
-
-
1.34
ENST00000399982
34
ENSE00001096842
chr14:
21862354-21861635
720
CHD8_HUMAN
1732-1972
241
0
-
-
1.35
ENST00000399982
35
ENSE00001096834
chr14:
21861413-21861265
149
CHD8_HUMAN
1972-2021
50
0
-
-
1.36
ENST00000399982
36
ENSE00001096823
chr14:
21860968-21860666
303
CHD8_HUMAN
2022-2122
101
0
-
-
1.37
ENST00000399982
37
ENSE00001096825
chr14:
21860105-21859992
114
CHD8_HUMAN
2123-2160
38
0
-
-
1.38
ENST00000399982
38
ENSE00001096832
chr14:
21859801-21859622
180
CHD8_HUMAN
2161-2220
60
0
-
-
1.39
ENST00000399982
39
ENSE00001096840
chr14:
21859222-21859106
117
CHD8_HUMAN
2221-2259
39
0
-
-
1.40
ENST00000399982
40
ENSE00001096848
chr14:
21854335-21853358
978
CHD8_HUMAN
2260-2446
187
1
A:1-80 (gaps)
136
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d2dl6a1 (A:8-77)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GYF/BRK domain-like
(9)
Superfamily
:
BRK domain-like
(5)
Family
:
BRK domain-like
(5)
Protein domain
:
Chromodomain-helicase-dna-binding protein 8, CHD8
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2dl6a1
A:8-77
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