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2DKS
Asym. Unit
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Asym.Unit (660 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE FIRST IG-LIKE DOMAIN OF HUMAN CARCINOEMBRYONIC ANTIGEN RELATED CELL ADHESION MOLECULE 8
Authors
:
K. Nagashima, F. Hayashi, M. Yoshida, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
14 Apr 06 (Deposition) - 01 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Beta-Sandwich, Ig-Fold, Carcinoembryonic Antigen Cgm6, Nonspecific Cross-Reacting Antigen Nca-95, Antigen Cd67, Cd66B Antigen, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Cell Adhesion
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Nagashima, F. Hayashi, M. Yoshida, S. Yokoyama
Solution Structure Of The First Ig-Like Domain Of Human Carcinoembryonic Antigen Related Cell Adhesion Molecule 8
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_049850 (A20V, chain A, )
2: VAR_011721 (R89K, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049850
A
45
V
CEAM8_HUMAN
Polymorphism
35221575
A
A
20
V
2
UniProt
VAR_011721
R
114
K
CEAM8_HUMAN
Polymorphism
1041997
A
R
89
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
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Exons
(3, 3)
Info
All Exons
Exon 1.1 (A:1-6 (gaps))
Exon 1.2 (A:7-117)
Exon 1.3 (A:117-130)
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1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000244336
1
ENSE00001734862
chr19:
43099082-43098917
166
CEAM8_HUMAN
1-22
22
1
A:1-6 (gaps)
8
1.2
ENST00000244336
2
ENSE00001709796
chr19:
43098052-43097693
360
CEAM8_HUMAN
22-142
121
1
A:7-117
111
1.3
ENST00000244336
3
ENSE00001708756
chr19:
43093887-43093609
279
CEAM8_HUMAN
142-235
94
1
A:117-130
14
1.4
ENST00000244336
4
ENSE00001689562
chr19:
43093190-43092936
255
CEAM8_HUMAN
235-320
86
0
-
-
1.5
ENST00000244336
5
ENSE00001415045
chr19:
43087489-43087358
132
CEAM8_HUMAN
320-349
30
0
-
-
1.6
ENST00000244336
6
ENSE00001510272
chr19:
43085505-43084393
1113
CEAM8_HUMAN
-
0
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_2dksA00 (A:1-130)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
2dksA00
A:1-130
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Pfam Domains
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Chain A
Asymmetric Unit 1
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