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2DJS
Asym. Unit
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Asym.Unit (548 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN EPHRIN TYPE-B RECEPTOR 1
Authors
:
M. Sato, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
05 Apr 06 (Deposition) - 05 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Tyrosine-Protein Kinase Receptor Eph-2, Net, Hek6, Elk, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sato, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structures Of The Fn3 Domain Of Human Ephrin Type-B Receptor 1
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_011804 (R59S, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011804
R
485
S
EPHB1_HUMAN
Polymorphism
1042788
A
R
59
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FN3 (-|A:8-102)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
EPHB1_HUMAN
322-432
433-528
1
-
A:8-102
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Exons
(4, 4)
Info
All Exons
Exon 1.18c (A:1-7 (gaps))
Exon 1.19a (A:7-48)
Exon 1.20 (A:49-102)
Exon 1.21 (A:103-108)
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All Exon Boundaries
1: Boundary 1.17/1.18c
2: Boundary 1.18c/1.19a
3: Boundary 1.19a/1.20
4: Boundary 1.20/1.21
5: Boundary 1.21/1.22
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.7a
ENST00000398015
7a
ENSE00001930517
chr3:
134514104-134514531
428
EPHB1_HUMAN
1-20
20
0
-
-
1.13
ENST00000398015
13
ENSE00001303670
chr3:
134644658-134644722
65
EPHB1_HUMAN
20-41
22
0
-
-
1.14f
ENST00000398015
14f
ENSE00001329897
chr3:
134670213-134670894
682
EPHB1_HUMAN
42-269
228
0
-
-
1.17
ENST00000398015
17
ENSE00001767599
chr3:
134825290-134825445
156
EPHB1_HUMAN
269-321
53
0
-
-
1.18c
ENST00000398015
18c
ENSE00001645608
chr3:
134851556-134851891
336
EPHB1_HUMAN
321-433
113
1
A:1-7 (gaps)
23
1.19a
ENST00000398015
19a
ENSE00001723961
chr3:
134872994-134873118
125
EPHB1_HUMAN
433-474
42
1
A:7-48
42
1.20
ENST00000398015
20
ENSE00001701123
chr3:
134880860-134881022
163
EPHB1_HUMAN
475-529
55
1
A:49-102
54
1.21
ENST00000398015
21
ENSE00001728529
chr3:
134884810-134884918
109
EPHB1_HUMAN
529-565
37
1
A:103-108
6
1.22
ENST00000398015
22
ENSE00001618327
chr3:
134885784-134885848
65
EPHB1_HUMAN
565-587
23
0
-
-
1.23
ENST00000398015
23
ENSE00001719384
chr3:
134898702-134898824
123
EPHB1_HUMAN
587-628
42
0
-
-
1.24b
ENST00000398015
24b
ENSE00001648910
chr3:
134911418-134911665
248
EPHB1_HUMAN
628-710
83
0
-
-
1.25
ENST00000398015
25
ENSE00001639353
chr3:
134920316-134920531
216
EPHB1_HUMAN
711-782
72
0
-
-
1.26
ENST00000398015
26
ENSE00001597838
chr3:
134959990-134960139
150
EPHB1_HUMAN
783-832
50
0
-
-
1.27
ENST00000398015
27
ENSE00001792565
chr3:
134967158-134967351
194
EPHB1_HUMAN
833-897
65
0
-
-
1.28
ENST00000398015
28
ENSE00001692283
chr3:
134968178-134968333
156
EPHB1_HUMAN
897-949
53
0
-
-
1.29c
ENST00000398015
29c
ENSE00001855733
chr3:
134977854-134979309
1456
EPHB1_HUMAN
949-984
36
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2djsa1 (A:8-102)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Ephrin type-B receptor 1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2djsa1
A:8-102
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2djsA01 (A:13-100)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
2djsA01
A:13-100
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (548 KB)
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