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2DJ7
Asym. Unit
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Asym.Unit (392 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF 3RD LIM DOMAIN OF ACTIN-BINDING LIM PROTEIN 3
Authors
:
T. N. Niraula, A. Sasagawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
31 Mar 06 (Deposition) - 01 Oct 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Lim Domain, Actin-Binding Lim Protein 3, Zn Binding Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. N. Niraula, A. Sasagawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of 3Rd Lim Domain Of Actin-Binding Lim Protein 3
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:18 , CYS A:21 , HIS A:39 , CYS A:42
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:45 , CYS A:48 , CYS A:65 , ASP A:68
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_050143 (G4D, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050143
G
125
D
ABLM3_HUMAN
Polymorphism
35907283
A
G
4
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: LIM_DOMAIN_2 (-|-|A:16-74|A:75-77)
2: LIM_DOMAIN_1 (-|-|A:18-52|A:75-77)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIM_DOMAIN_2
PS50023
LIM domain profile.
ABLM3_HUMAN
21-80
81-140
149-208
209-268
2
-
-
A:16-74
A:75-77
2
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
ABLM3_HUMAN
23-56
82-115
151-185
210-243
2
-
-
A:18-52
A:75-77
[
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Exons
(4, 4)
Info
All Exons
Exon 1.5a (A:1-17 (gaps))
Exon 1.6 (A:17-59)
Exon 1.7 (A:59-76 (gaps))
Exon 1.8 (A:77-80)
View:
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Label:
All Exon Boundaries
1: Boundary 1.3/1.5a
2: Boundary 1.5a/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000309868
1c
ENSE00001878782
chr5:
148521066-148521217
152
ABLM3_HUMAN
-
0
0
-
-
1.1g
ENST00000309868
1g
ENSE00001427228
chr5:
148521572-148521671
100
ABLM3_HUMAN
1-5
5
0
-
-
1.2a
ENST00000309868
2a
ENSE00001201072
chr5:
148563015-148563152
138
ABLM3_HUMAN
5-51
47
0
-
-
1.3
ENST00000309868
3
ENSE00001201051
chr5:
148577782-148577965
184
ABLM3_HUMAN
51-112
62
0
-
-
1.5a
ENST00000309868
5a
ENSE00001201047
chr5:
148579879-148579991
113
ABLM3_HUMAN
112-150
39
1
A:1-17 (gaps)
33
1.6
ENST00000309868
6
ENSE00001201038
chr5:
148586571-148586697
127
ABLM3_HUMAN
150-192
43
1
A:17-59
43
1.7
ENST00000309868
7
ENSE00001201031
chr5:
148590289-148590382
94
ABLM3_HUMAN
192-223
32
1
A:59-76 (gaps)
28
1.8
ENST00000309868
8
ENSE00001201023
chr5:
148596522-148596609
88
ABLM3_HUMAN
224-253
30
1
A:77-80
4
1.9
ENST00000309868
9
ENSE00001201016
chr5:
148610212-148610270
59
ABLM3_HUMAN
253-272
20
0
-
-
1.10a
ENST00000309868
10a
ENSE00001201012
chr5:
148612792-148612863
72
ABLM3_HUMAN
273-296
24
0
-
-
1.11
ENST00000309868
11
ENSE00001201007
chr5:
148617011-148617166
156
ABLM3_HUMAN
297-348
52
0
-
-
1.12
ENST00000309868
12
ENSE00001269114
chr5:
148618811-148618840
30
ABLM3_HUMAN
349-358
10
0
-
-
1.13
ENST00000309868
13
ENSE00001201000
chr5:
148619322-148619451
130
ABLM3_HUMAN
359-402
44
0
-
-
1.15
ENST00000309868
15
ENSE00001200997
chr5:
148620239-148620337
99
ABLM3_HUMAN
402-435
34
0
-
-
1.16a
ENST00000309868
16a
ENSE00001200993
chr5:
148622054-148622101
48
ABLM3_HUMAN
435-451
17
0
-
-
1.17b
ENST00000309868
17b
ENSE00001200990
chr5:
148624444-148624578
135
ABLM3_HUMAN
451-496
46
0
-
-
1.18
ENST00000309868
18
ENSE00001200988
chr5:
148626045-148626109
65
ABLM3_HUMAN
496-517
22
0
-
-
1.19
ENST00000309868
19
ENSE00001200983
chr5:
148627345-148627492
148
ABLM3_HUMAN
518-567
50
0
-
-
1.20
ENST00000309868
20
ENSE00001269072
chr5:
148629378-148629407
30
ABLM3_HUMAN
567-577
11
0
-
-
1.21
ENST00000309868
21
ENSE00001200975
chr5:
148630010-148630068
59
ABLM3_HUMAN
577-596
20
0
-
-
1.22
ENST00000309868
22
ENSE00001200967
chr5:
148630922-148630982
61
ABLM3_HUMAN
597-617
21
0
-
-
1.23
ENST00000309868
23
ENSE00001689480
chr5:
148631764-148631771
8
ABLM3_HUMAN
617-619
3
0
-
-
1.24b
ENST00000309868
24b
ENSE00001200957
chr5:
148632320-148632400
81
ABLM3_HUMAN
620-646
27
0
-
-
1.25d
ENST00000309868
25d
ENSE00001890112
chr5:
148637854-148640002
2149
ABLM3_HUMAN
647-683
37
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2dj7a1 (A:44-74)
1b: SCOP_d2dj7a2 (A:8-43)
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(
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Organisms
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(
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Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
LIM domain
(37)
Protein domain
:
Actin-binding LIM protein 3, abLIM-3
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2dj7a1
A:44-74
1b
d2dj7a2
A:8-43
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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