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Asym. Unit
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Asym.Unit (492 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE RRM DOMAIN OF TRNA SELENOCYSTEINE ASSOCIATED PROTEIN
Authors
:
W. Dang, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
30 Mar 06 (Deposition) - 30 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Structural Genomics, Rrm Domain, Trna Selenocysteine Associated Protein, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Dang, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama
Solution Structure Of The Rrm Domain Of Trna Selenocysteine Associated Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 2)
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1: RRM (A:10-93|A:95-99)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
TSAP1_HUMAN
3-86
96-175
2
A:10-93
A:95-99
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Exons
(6, 6)
Info
All Exons
Exon 1.1a (A:8-16)
Exon 1.1i (A:17-49)
Exon 1.2a (A:49-82)
Exon 1.2f (A:83-93)
Exon 1.3a (A:94-98)
Exon 1.4b (A:98-99)
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1: Boundary -/1.1a
2: Boundary 1.1a/1.1i
3: Boundary 1.1i/1.2a
4: Boundary 1.2a/1.2f
5: Boundary 1.2f/1.3a
6: Boundary 1.3a/1.4b
7: Boundary 1.4b/1.5
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000373830
1a
ENSE00001461683
chr1:
28879597-28879649
53
TSAP1_HUMAN
1-9
9
1
A:8-16
9
1.1i
ENST00000373830
1i
ENSE00001272806
chr1:
28880152-28880249
98
TSAP1_HUMAN
10-42
33
1
A:17-49
33
1.2a
ENST00000373830
2a
ENSE00001272850
chr1:
28887145-28887244
100
TSAP1_HUMAN
42-75
34
1
A:49-82
34
1.2f
ENST00000373830
2f
ENSE00001272794
chr1:
28887858-28887910
53
TSAP1_HUMAN
76-93
18
1
A:83-93
11
1.3a
ENST00000373830
3a
ENSE00001272787
chr1:
28891215-28891346
132
TSAP1_HUMAN
93-137
45
1
A:94-98
5
1.4b
ENST00000373830
4b
ENSE00001272781
chr1:
28893806-28893925
120
TSAP1_HUMAN
137-177
41
1
A:98-99
2
1.5
ENST00000373830
5
ENSE00001272773
chr1:
28897688-28897850
163
TSAP1_HUMAN
177-231
55
0
-
-
1.6
ENST00000373830
6
ENSE00001272763
chr1:
28898379-28898412
34
TSAP1_HUMAN
232-243
12
0
-
-
1.8d
ENST00000373830
8d
ENSE00001461682
chr1:
28904012-28905051
1040
TSAP1_HUMAN
243-287
45
0
-
-
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SCOP Domains
(1, 1)
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1a: SCOP_d2diva_ (A:)
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Organisms
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
automated matches
(67)
Protein domain
:
automated matches
(67)
Human (Homo sapiens) [TaxId: 9606]
(56)
1a
d2diva_
A:
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CATH Domains
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Chain A
Asymmetric Unit 1
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