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Asym. Unit
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Asym.Unit (367 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE MYB_DNA-BINDING DOMAIN OF HUMAN CELL DIVISION CYCLE 5-LIKE PROTEIN
Authors
:
M. Yoneyama, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
30 Mar 06 (Deposition) - 03 Apr 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Myb_dna-Binding Domain, Cell Cycle, Dna Binding, Spliceosome, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Yoneyama, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HTH_MYB (A:8-59|A:60-70)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_MYB
PS51294
Myb-type HTH DNA-binding domain profile.
CDC5L_HUMAN
1-58
59-108
2
A:8-59
A:60-70
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Exons
(3, 3)
Info
All Exons
Exon 1.1a (A:2-16)
Exon 1.2 (A:17-51)
Exon 1.3 (A:51-70 (gaps))
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000371477
1a
ENSE00001911541
chr6:
44355262-44355605
344
CDC5L_HUMAN
1-15
15
1
A:2-16
15
1.2
ENST00000371477
2
ENSE00001140092
chr6:
44358005-44358108
104
CDC5L_HUMAN
16-50
35
1
A:17-51
35
1.3
ENST00000371477
3
ENSE00001140084
chr6:
44360404-44360565
162
CDC5L_HUMAN
50-104
55
1
A:51-70 (gaps)
41
1.4b
ENST00000371477
4b
ENSE00000850339
chr6:
44361183-44361310
128
CDC5L_HUMAN
104-147
44
0
-
-
1.5b
ENST00000371477
5b
ENSE00001140069
chr6:
44364078-44364177
100
CDC5L_HUMAN
147-180
34
0
-
-
1.6
ENST00000371477
6
ENSE00000850341
chr6:
44371546-44371764
219
CDC5L_HUMAN
180-253
74
0
-
-
1.7
ENST00000371477
7
ENSE00001140056
chr6:
44374060-44374204
145
CDC5L_HUMAN
253-301
49
0
-
-
1.8
ENST00000371477
8
ENSE00000850343
chr6:
44376181-44376369
189
CDC5L_HUMAN
302-364
63
0
-
-
1.9
ENST00000371477
9
ENSE00000850344
chr6:
44387186-44387334
149
CDC5L_HUMAN
365-414
50
0
-
-
1.10
ENST00000371477
10
ENSE00000974545
chr6:
44390384-44390546
163
CDC5L_HUMAN
414-468
55
0
-
-
1.11
ENST00000371477
11
ENSE00000481284
chr6:
44392156-44392320
165
CDC5L_HUMAN
469-523
55
0
-
-
1.12
ENST00000371477
12
ENSE00000754512
chr6:
44393840-44393920
81
CDC5L_HUMAN
524-550
27
0
-
-
1.13
ENST00000371477
13
ENSE00000754513
chr6:
44394219-44394461
243
CDC5L_HUMAN
551-631
81
0
-
-
1.14
ENST00000371477
14
ENSE00000754514
chr6:
44397450-44397647
198
CDC5L_HUMAN
632-697
66
0
-
-
1.15
ENST00000371477
15
ENSE00000619318
chr6:
44413392-44413604
213
CDC5L_HUMAN
698-768
71
0
-
-
1.16b
ENST00000371477
16b
ENSE00001948716
chr6:
44414344-44418163
3820
CDC5L_HUMAN
769-802
34
0
-
-
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Pfam Domains
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Asymmetric Unit 1
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