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Asym. Unit
Info
Asym.Unit (122 KB)
Biol.Unit 1 (116 KB)
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(1)
Title
:
COMPLEX OF A Y195F MUTANT CGTASE FROM B. CIRCULANS STRAIN 251 COMPLEXED WITH A MALTONONAOSE INHIBITOR AT PH 9.8 OBTAINED AFTER SOAKING THE CRYSTAL WITH ACARBOSE AND MALTOHEXAOSE
Authors
:
B. V. Strokopytov, R. M. A. Knegtel, J. C. M. Uitdehaag, B. W. Dijkstra
Date
:
27 May 98 (Deposition) - 09 Dec 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycosyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Strokopytov, R. M. Knegtel, D. Penninga, H. J. Rozeboom, K. H. Kalk, L. Dijkhuizen, B. W. Dijkstra
Structure Of Cyclodextrin Glycosyltransferase Complexed With A Maltononaose Inhibitor At 2. 6 Angstrom Resolution. Implications For Product Specificity.
Biochemistry V. 35 4241 1996
(for further references see the
PDB file header
)
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: 1-AMINO-2,3-DIHYDROXY-5-HYDROXYMET... (ADHa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: 6-DEOXY-ALPHA-D-GLUCOSE (G6Da)
4a: ALPHA-D-GLUCOSE (GLCa)
4b: ALPHA-D-GLUCOSE (GLCb)
4c: ALPHA-D-GLUCOSE (GLCc)
4d: ALPHA-D-GLUCOSE (GLCd)
4e: ALPHA-D-GLUCOSE (GLCe)
4f: ALPHA-D-GLUCOSE (GLCf)
4g: ALPHA-D-GLUCOSE (GLCg)
4h: ALPHA-D-GLUCOSE (GLCh)
4i: ALPHA-D-GLUCOSE (GLCi)
4j: ALPHA-D-GLUCOSE (GLCj)
4k: ALPHA-D-GLUCOSE (GLCk)
4l: ALPHA-D-GLUCOSE (GLCl)
4m: ALPHA-D-GLUCOSE (GLCm)
4n: ALPHA-D-GLUCOSE (GLCn)
4o: ALPHA-D-GLUCOSE (GLCo)
4p: ALPHA-D-GLUCOSE (GLCp)
4q: ALPHA-D-GLUCOSE (GLCq)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADH
1
Ligand/Ion
1-AMINO-2,3-DIHYDROXY-5-HYDROXYMETHYL CYCLOHEX-5-ENE
2
CA
2
Ligand/Ion
CALCIUM ION
3
G6D
1
Ligand/Ion
6-DEOXY-ALPHA-D-GLUCOSE
4
GLC
17
Ligand/Ion
ALPHA-D-GLUCOSE
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: 16 (UNKNOWN)
02: 16_01 (UNKNOWN)
03: 26 (UNKNOWN)
04: 26_02 (UNKNOWN)
05: 36 (UNKNOWN)
06: AC1 (SOFTWARE)
07: AC2 (SOFTWARE)
08: AC3 (SOFTWARE)
09: AC4 (SOFTWARE)
10: AC5 (SOFTWARE)
11: AC6 (SOFTWARE)
12: AC7 (SOFTWARE)
13: AC8 (SOFTWARE)
14: AC9 (SOFTWARE)
15: BC1 (SOFTWARE)
16: BC2 (SOFTWARE)
17: BC3 (SOFTWARE)
18: BC5 (SOFTWARE)
19: BC6 (SOFTWARE)
20: BC7 (SOFTWARE)
21: BC8 (SOFTWARE)
22: BC9 (SOFTWARE)
23: CA1 (UNKNOWN)
24: CA2 (UNKNOWN)
25: CAT (UNKNOWN)
26: CC1 (SOFTWARE)
27: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
16
UNKNOWN
SER A:382 , TRP A:616 , LYS A:651 , TRP A:662 , GLU A:663 , ASN A:667
FIRST MALTOSE BINDING SITE.
02
16_01
UNKNOWN
SER A:382 , TRP A:616 , LYS A:651 , TRP A:662 , GLU A:663 , ASN A:667
FIRST MALTOSE BINDING SITE.
03
26
UNKNOWN
THR A:598 , ALA A:599 , GLY A:601 , ASN A:603 , ASN A:627 , GLN A:628 , TYR A:633
SECOND MALTOSE BINDING SITE.
04
26_02
UNKNOWN
THR A:598 , ALA A:599 , GLY A:601 , ASN A:603 , ASN A:627 , GLN A:628 , TYR A:633
SECOND MALTOSE BINDING SITE.
05
36
UNKNOWN
TYR A:301 , GLU A:411 , ARG A:412 , TRP A:413 , ILE A:414 , GLY A:446 , VAL A:448
THIRD MALTOSE BINDING SITE. THIS SITE ALSO INCLUDES RESIDUES SER 537, ALA 539, AND ASP 540 FROM A SYMMETRY-RELATED MOLECULE.
06
AC1
SOFTWARE
TRP A:413 , ILE A:414 , SER A:445 , ALA A:539 , ASP A:540 , GLC A:691 , HOH A:782
BINDING SITE FOR RESIDUE GLC A 690
07
AC2
SOFTWARE
GLU A:411 , ARG A:412 , GLY A:446 , GLC A:690 , HOH A:757
BINDING SITE FOR RESIDUE GLC A 691
08
AC3
SOFTWARE
LYS A:651 , TRP A:662 , GLC A:694
BINDING SITE FOR RESIDUE GLC A 693
09
AC4
SOFTWARE
TRP A:616 , ASN A:667 , GLC A:693 , GLC A:695
BINDING SITE FOR RESIDUE GLC A 694
10
AC5
SOFTWARE
GLC A:694
BINDING SITE FOR RESIDUE GLC A 695
11
AC6
SOFTWARE
LEU A:600 , GLC A:698
BINDING SITE FOR RESIDUE GLC A 697
12
AC7
SOFTWARE
LEU A:600 , GLC A:697 , GLC A:699
BINDING SITE FOR RESIDUE GLC A 698
13
AC8
SOFTWARE
THR A:598 , ALA A:599 , TYR A:633 , GLC A:698 , GLC A:700
BINDING SITE FOR RESIDUE GLC A 699
14
AC9
SOFTWARE
ALA A:599 , LEU A:600 , GLY A:601 , GLN A:602 , ASN A:603 , ASN A:627 , GLN A:628 , GLC A:699 , GLC A:701
BINDING SITE FOR RESIDUE GLC A 700
15
BC1
SOFTWARE
THR A:185 , GLN A:628 , GLC A:700
BINDING SITE FOR RESIDUE GLC A 701
16
BC2
SOFTWARE
PHE A:183 , LYS A:232 , G6D A:704
BINDING SITE FOR RESIDUE GLC A 703
17
BC3
SOFTWARE
ALA A:230 , HIS A:233 , GLU A:257 , ASP A:328 , GLC A:703 , ADH A:705
BINDING SITE FOR RESIDUE G6D A 704
18
BC5
SOFTWARE
TYR A:89 , ASP A:196 , ASP A:371 , GLC A:706 , GLC A:708
BINDING SITE FOR RESIDUE GLC A 707
19
BC6
SOFTWARE
ASP A:196 , GLC A:707 , GLC A:709
BINDING SITE FOR RESIDUE GLC A 708
20
BC7
SOFTWARE
PHE A:195 , GLC A:708 , GLC A:710 , HOH A:824
BINDING SITE FOR RESIDUE GLC A 709
21
BC8
SOFTWARE
GLY A:180 , ASN A:193 , PHE A:195 , SER A:455 , GLC A:709 , GLC A:711
BINDING SITE FOR RESIDUE GLC A 710
22
BC9
SOFTWARE
ALA A:144 , SER A:145 , SER A:146 , ASP A:147 , SER A:455 , TYR A:456 , GLC A:710
BINDING SITE FOR RESIDUE GLC A 711
23
CA1
UNKNOWN
ASP A:27 , ASN A:29 , ASN A:32 , ASN A:33 , GLY A:51 , ASP A:53
FIRST CALCIUM BINDING SITE.
24
CA2
UNKNOWN
ASN A:139 , ILE A:190 , ASP A:199 , HIS A:233
SECOND CALCIUM BINDING SITE.
25
CAT
UNKNOWN
ASP A:229 , GLU A:257 , ASP A:328
CATALYTIC SITE.
26
CC1
SOFTWARE
ASP A:27 , ASN A:29 , ASN A:32 , ASN A:33 , GLY A:51 , ASP A:53 , HOH A:764
BINDING SITE FOR RESIDUE CA A 688
27
CC3
SOFTWARE
TYR A:100 , HIS A:140 , ASP A:229 , GLU A:257 , HIS A:327 , ASP A:328 , G6D A:704 , GLC A:706
BINDING SITE FOR RESIDUE ADH A 705
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CBM20 (A:581-686)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBM20
PS51166
CBM20 (carbohydrate binding type-20) domain profile.
CDGT2_BACCI
608-713
1
A:581-686
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d2dija3 (A:407-496)
2a: SCOP_d2dija1 (A:497-583)
3a: SCOP_d2dija2 (A:584-686)
4a: SCOP_d2dija4 (A:1-406)
View:
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Classes
(
)
(
)
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)
(
)
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(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Cyclodextrin glycosyltransferase
(51)
Bacillus circulans, different strains [TaxId: 1397]
(36)
1a
d2dija3
A:407-496
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
E-set domains of sugar-utilizing enzymes
(147)
Protein domain
:
Cyclomaltodextrin glycanotransferase, domain D
(49)
Bacillus circulans, different strains [TaxId: 1397]
(36)
2a
d2dija1
A:497-583
Fold
:
Prealbumin-like
(433)
Superfamily
:
Starch-binding domain-like
(84)
Family
:
Starch-binding domain
(67)
Protein domain
:
Cyclodextrin glycosyltransferase, C-terminal domain
(51)
Bacillus circulans, different strains [TaxId: 1397]
(36)
3a
d2dija2
A:584-686
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Cyclodextrin glycosyltransferase
(51)
Bacillus circulans, different strains [TaxId: 1397]
(36)
4a
d2dija4
A:1-406
[
close SCOP info
]
CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_2dijA01 (A:1-400)
2a: CATH_2dijA02 (A:401-495)
3a: CATH_2dijA04 (A:583-685)
3b: CATH_2dijA03 (A:496-582)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Bacillus circulans. Organism_taxid: 1397. Strain: 251.
(11)
1a
2dijA01
A:1-400
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Golgi alpha-mannosidase II
(346)
Bacillus circulans. Organism_taxid: 1397. Strain: 251.
(11)
2a
2dijA02
A:401-495
Homologous Superfamily
:
Immunoglobulins
(2282)
Bacillus circulans. Organism_taxid: 1397. Strain: 251.
(11)
3a
2dijA04
A:583-685
3b
2dijA03
A:496-582
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (122 KB)
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