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2DHH
Asym. Unit
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Asym.Unit (486 KB)
Biol.Unit 1 (470 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A MULTIDRUG TRANSPORTER REVEAL A FUNCTIONALLY ROTATING MECHANISM
Authors
:
S. Murakami, R. Nakashima, E. Yamashita, T. Matsumoto
Date
:
23 Mar 06 (Deposition) - 22 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Membrane Transporter, Membrane Protein, Multidrug Efflux, Drug Resistance, Transporter, Exporter, Antiporter
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Murakami, R. Nakashima, E. Yamashita, T. Matsumoto, A. Yamaguchi
Crystal Structures Of A Multidrug Transporter Reveal A Functionally Rotating Mechanism
Nature V. 443 173 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d2dhha2 (A:38-134)
1b: SCOP_d2dhha6 (A:567-673)
1c: SCOP_d2dhha7 (A:674-724,A:813-859)
1d: SCOP_d2dhhb2 (B:38-134)
1e: SCOP_d2dhhb3 (B:135-181,B:274-330)
1f: SCOP_d2dhhb6 (B:567-673)
1g: SCOP_d2dhhb7 (B:674-724,B:813-859)
1h: SCOP_d2dhhc2 (C:38-134)
1i: SCOP_d2dhhc3 (C:135-181,C:274-330)
1j: SCOP_d2dhhc6 (C:567-673)
1k: SCOP_d2dhhc7 (C:674-724,C:813-859)
1l: SCOP_d2dhha3 (A:135-181,A:274-330)
2a: SCOP_d2dhha4 (A:182-273)
2b: SCOP_d2dhha8 (A:725-812)
2c: SCOP_d2dhhb4 (B:182-273)
2d: SCOP_d2dhhb8 (B:725-812)
2e: SCOP_d2dhhc4 (C:182-273)
2f: SCOP_d2dhhc8 (C:725-812)
3a: SCOP_d2dhha1 (A:1-37,A:331-498)
3b: SCOP_d2dhha5 (A:513-566,A:869-1036)
3c: SCOP_d2dhhb1 (B:1-37,B:331-498)
3d: SCOP_d2dhhb5 (B:513-566,B:869-1036)
3e: SCOP_d2dhhc1 (C:1-37,C:331-498)
3f: SCOP_d2dhhc5 (C:513-566,C:869-1036)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
(7)
Family
:
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
(7)
Protein domain
:
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
(7)
Escherichia coli [TaxId: 562]
(7)
1a
d2dhha2
A:38-134
1b
d2dhha6
A:567-673
1c
d2dhha7
A:674-724,A:813-859
1d
d2dhhb2
B:38-134
1e
d2dhhb3
B:135-181,B:274-330
1f
d2dhhb6
B:567-673
1g
d2dhhb7
B:674-724,B:813-859
1h
d2dhhc2
C:38-134
1i
d2dhhc3
C:135-181,C:274-330
1j
d2dhhc6
C:567-673
1k
d2dhhc7
C:674-724,C:813-859
1l
d2dhha3
A:135-181,A:274-330
Fold
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(7)
Superfamily
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(7)
Family
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(7)
Protein domain
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(7)
Escherichia coli [TaxId: 562]
(7)
2a
d2dhha4
A:182-273
2b
d2dhha8
A:725-812
2c
d2dhhb4
B:182-273
2d
d2dhhb8
B:725-812
2e
d2dhhc4
C:182-273
2f
d2dhhc8
C:725-812
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Multidrug efflux transporter AcrB transmembrane domain
(7)
Superfamily
:
Multidrug efflux transporter AcrB transmembrane domain
(7)
Family
:
Multidrug efflux transporter AcrB transmembrane domain
(7)
Protein domain
:
Multidrug efflux transporter AcrB transmembrane domain
(7)
Escherichia coli [TaxId: 562]
(7)
3a
d2dhha1
A:1-37,A:331-498
3b
d2dhha5
A:513-566,A:869-1036
3c
d2dhhb1
B:1-37,B:331-498
3d
d2dhhb5
B:513-566,B:869-1036
3e
d2dhhc1
C:1-37,C:331-498
3f
d2dhhc5
C:513-566,C:869-1036
[
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CATH Domains
(6, 24)
Info
all CATH domains
1a: CATH_2dhhA02 (A:38-132,A:813-820)
1b: CATH_2dhhB02 (B:38-132,B:813-820)
1c: CATH_2dhhA06 (A:569-673)
1d: CATH_2dhhB06 (B:569-673)
1e: CATH_2dhhC06 (C:569-673)
1f: CATH_2dhhC02 (C:38-132,C:813-820)
2a: CATH_2dhhA03 (A:133-179,A:276-328)
2b: CATH_2dhhB03 (B:133-179,B:276-328)
2c: CATH_2dhhC03 (C:133-179,C:276-328)
3a: CATH_2dhhA07 (A:674-723,A:821-867)
3b: CATH_2dhhC07 (C:674-723,C:821-864)
3c: CATH_2dhhB07 (B:674-723,B:821-869)
4a: CATH_2dhhA08 (A:724-812)
4b: CATH_2dhhB08 (B:724-812)
4c: CATH_2dhhA04 (A:180-275)
4d: CATH_2dhhB04 (B:180-275)
4e: CATH_2dhhC04 (C:180-275)
4f: CATH_2dhhC08 (C:724-812)
5a: CATH_2dhhB05 (B:519-568,B:870-1036)
5b: CATH_2dhhA05 (A:513-568,A:868-1036)
5c: CATH_2dhhC05 (C:515-568,C:865-1036)
6a: CATH_2dhhB01 (B:1-37,B:329-518)
6b: CATH_2dhhC01 (C:1-37,C:329-514)
6c: CATH_2dhhA01 (A:1-37,A:329-498)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
Multidrug efflux transporter AcrB pore domain
(27)
Escherichia coli. Organism_taxid: 562.
(4)
1a
2dhhA02
A:38-132,A:813-820
1b
2dhhB02
B:38-132,B:813-820
1c
2dhhA06
A:569-673
1d
2dhhB06
B:569-673
1e
2dhhC06
C:569-673
1f
2dhhC02
C:38-132,C:813-820
Homologous Superfamily
:
Multidrug efflux transporter AcrB pore domain like
(27)
Escherichia coli. Organism_taxid: 562.
(4)
2a
2dhhA03
A:133-179,A:276-328
2b
2dhhB03
B:133-179,B:276-328
2c
2dhhC03
C:133-179,C:276-328
Homologous Superfamily
:
Multidrug efflux transporter AcrB pore domain
(27)
Escherichia coli. Organism_taxid: 562.
(4)
3a
2dhhA07
A:674-723,A:821-867
3b
2dhhC07
C:674-723,C:821-864
3c
2dhhB07
B:674-723,B:821-869
Topology
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(27)
Homologous Superfamily
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(27)
Escherichia coli. Organism_taxid: 562.
(4)
4a
2dhhA08
A:724-812
4b
2dhhB08
B:724-812
4c
2dhhA04
A:180-275
4d
2dhhB04
B:180-275
4e
2dhhC04
C:180-275
4f
2dhhC08
C:724-812
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(27)
Homologous Superfamily
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(27)
Escherichia coli. Organism_taxid: 562.
(4)
5a
2dhhB05
B:519-568,B:870-1036
5b
2dhhA05
A:513-568,A:868-1036
5c
2dhhC05
C:515-568,C:865-1036
Architecture
:
Up-down Bundle
(3216)
Topology
:
Multidrug efflux transporter AcrB transmembrane fold
(27)
Homologous Superfamily
:
Multidrug efflux transporter AcrB transmembrane domain
(27)
Escherichia coli. Organism_taxid: 562.
(4)
6a
2dhhB01
B:1-37,B:329-518
6b
2dhhC01
C:1-37,C:329-514
6c
2dhhA01
A:1-37,A:329-498
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Pfam Domains
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