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2DH9
Asym. Unit
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Asym.Unit (455 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE C-TERMINAL RNA BINDING DOMAIN IN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M
Authors
:
T. Ochi, K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
23 Mar 06 (Deposition) - 23 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rrm Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Ochi, K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The C-Terminal Rna Binding Domain In Heterogeneous Nuclear Ribonucleoprotein M
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (-|-|A:540-614)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
HNRPM_HUMAN
71-149
204-281
653-729
1
-
-
A:540-614
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Exons
(3, 3)
Info
All Exons
Exon 1.14 (A:533-544 (gaps))
Exon 1.15 (A:545-562)
Exon 1.16 (A:562-615)
View:
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All Exon Boundaries
1: Boundary 1.13/1.14
2: Boundary 1.14/1.15
3: Boundary 1.15/1.16
4: Boundary 1.16/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000325495
1
ENSE00001293209
chr19:
8509651-8509995
345
HNRPM_HUMAN
1-38
38
0
-
-
1.2
ENST00000325495
2
ENSE00001295663
chr19:
8520289-8520458
170
HNRPM_HUMAN
38-95
58
0
-
-
1.3
ENST00000325495
3
ENSE00001679072
chr19:
8527413-8527465
53
HNRPM_HUMAN
95-112
18
0
-
-
1.4
ENST00000325495
4
ENSE00001766447
chr19:
8528381-8528388
8
HNRPM_HUMAN
113-115
3
0
-
-
1.5
ENST00000325495
5
ENSE00001154513
chr19:
8528477-8528570
94
HNRPM_HUMAN
115-146
32
0
-
-
1.6b
ENST00000325495
6b
ENSE00000954246
chr19:
8530208-8530399
192
HNRPM_HUMAN
147-210
64
0
-
-
1.7
ENST00000325495
7
ENSE00000909978
chr19:
8531119-8531272
154
HNRPM_HUMAN
211-262
52
0
-
-
1.8
ENST00000325495
8
ENSE00001618911
chr19:
8532419-8532468
50
HNRPM_HUMAN
262-278
17
0
-
-
1.9
ENST00000325495
9
ENSE00001317836
chr19:
8533658-8533718
61
HNRPM_HUMAN
279-299
21
0
-
-
1.10
ENST00000325495
10
ENSE00001290592
chr19:
8536210-8536311
102
HNRPM_HUMAN
299-333
35
0
-
-
1.11
ENST00000325495
11
ENSE00000909986
chr19:
8538548-8538592
45
HNRPM_HUMAN
333-348
16
0
-
-
1.12
ENST00000325495
12
ENSE00001307025
chr19:
8539051-8539128
78
HNRPM_HUMAN
348-374
27
0
-
-
1.13
ENST00000325495
13
ENSE00000909990
chr19:
8548042-8548095
54
HNRPM_HUMAN
374-392
19
0
-
-
1.14
ENST00000325495
14
ENSE00000909993
chr19:
8550487-8551289
803
HNRPM_HUMAN
392-659
268
1
A:533-544 (gaps)
24
1.15
ENST00000325495
15
ENSE00000909995
chr19:
8551908-8551959
52
HNRPM_HUMAN
660-677
18
1
A:545-562
18
1.16
ENST00000325495
16
ENSE00001299648
chr19:
8553575-8553885
311
HNRPM_HUMAN
677-730
54
1
A:562-615
54
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2dh9a_ (A:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
automated matches
(67)
Protein domain
:
automated matches
(67)
Human (Homo sapiens) [TaxId: 9606]
(56)
1a
d2dh9a_
A:
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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