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2DH1
Asym. Unit
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Asym.Unit (26 KB)
Biol.Unit 1 (12 KB)
Biol.Unit 2 (12 KB)
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Title
:
CRYSTAL STRUCTURE OF PEANUT LECTIN LACTOSE-AZOBENZENE-4,4'-DICARBOXYLIC ACID-LACTOSE COMPLEX
Authors
:
S. K. Natchiar, O. Srinivas, M. Nivedita, D. Sagarika, N. Jayaraman, A. Surolia, M. Vijayan
Date
:
17 Mar 06 (Deposition) - 15 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
7.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Legume Lectin, Agglutinin, Crosslink, Open Quaternary Structure, Carbohydrate Specificity, Multivalency, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. K. Natchiar, O. Srinivas, M. Nivedita, D. Sagarika, N. Jayaraman, A. Surolia, M. Vijayan
Multivalency In Lectins - A Crystallographic, Modelling And Light-Scattering Study Involving Peanut Lectin And A Bivalent Ligand
Curr. Sci. V. 90 1230 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
(3, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_LECG_ARAHY_001 (E92V, chain A/B/C/D, )
2: VAR_LECG_ARAHY_002 (K149A, chain A/B/C/D, )
3: VAR_LECG_ARAHY_003 (K162I, chain A/B/C/D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_LECG_ARAHY_001
*
E
115
V
LECG_ARAHY
---
---
A/B/C/D
E
92
V
2
UniProt
VAR_LECG_ARAHY_002
*
K
172
A
LECG_ARAHY
---
---
A/B/C/D
K
149
A
3
UniProt
VAR_LECG_ARAHY_003
*
K
185
I
LECG_ARAHY
---
---
A/B/C/D
K
162
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: LECTIN_LEGUME_BETA (A:118-124,B:118-124,C:118-124,D:11...)
2: LECTIN_LEGUME_ALPHA (A:198-207,B:198-207,C:198-207,D:19...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LECTIN_LEGUME_BETA
PS00307
Legume lectins beta-chain signature.
LECG_ARAHY
141-147
4
A:118-124
B:118-124
C:118-124
D:118-124
2
LECTIN_LEGUME_ALPHA
PS00308
Legume lectins alpha-chain signature.
LECG_ARAHY
221-230
4
A:198-207
B:198-207
C:198-207
D:198-207
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SCOP Domains
(1, 4)
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All SCOP Domains
1a: SCOP_d2dh1a1 (A:1-232)
1b: SCOP_d2dh1b1 (B:1-232)
1c: SCOP_d2dh1c1 (C:1-232)
1d: SCOP_d2dh1d1 (D:1-232)
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Class
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All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Legume lectin
(110)
Peanut (Arachis hypogaea) [TaxId: 3818]
(23)
1a
d2dh1a1
A:1-232
1b
d2dh1b1
B:1-232
1c
d2dh1c1
C:1-232
1d
d2dh1d1
D:1-232
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Pfam Domains
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Asym.Unit (26 KB)
Header - Asym.Unit
Biol.Unit 1 (12 KB)
Header - Biol.Unit 1
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