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2DGU
Asym. Unit
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Asym.Unit (545 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN IN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q
Authors
:
C. Abe, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
15 Mar 06 (Deposition) - 15 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rrm Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Abe, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The Rna Binding Domain In Heterogeneous Nuclear Ribonucleoprotein Q
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (-|A:338-408|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
HNRPQ_HUMAN
162-241
338-408
243-325
1
-
A:338-408
-
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Exons
(4, 4)
Info
All Exons
Exon 1.9b (A:327-336 (gaps))
Exon 1.10 (A:337-386)
Exon 1.11 (A:387-424)
Exon 1.12c (A:425-429 (gaps))
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1: Boundary 1.8/1.9b
2: Boundary 1.9b/1.10
3: Boundary 1.10/1.11
4: Boundary 1.11/1.12c
5: Boundary 1.12c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000369622
2b
ENSE00001840554
chr6:
86353003-86352515
489
HNRPQ_HUMAN
-
0
0
-
-
1.3
ENST00000369622
3
ENSE00001450462
chr6:
86351169-86351010
160
HNRPQ_HUMAN
1-50
50
0
-
-
1.4
ENST00000369622
4
ENSE00000798141
chr6:
86350282-86350164
119
HNRPQ_HUMAN
50-89
40
0
-
-
1.5
ENST00000369622
5
ENSE00000798138
chr6:
86350046-86349939
108
HNRPQ_HUMAN
90-125
36
0
-
-
1.6
ENST00000369622
6
ENSE00000798137
chr6:
86347074-86346961
114
HNRPQ_HUMAN
126-163
38
0
-
-
1.7b
ENST00000369622
7b
ENSE00000798135
chr6:
86346861-86346685
177
HNRPQ_HUMAN
164-222
59
0
-
-
1.8
ENST00000369622
8
ENSE00000798133
chr6:
86333830-86333695
136
HNRPQ_HUMAN
223-268
46
0
-
-
1.9b
ENST00000369622
9b
ENSE00001885760
chr6:
86332405-86332200
206
HNRPQ_HUMAN
268-336
69
1
A:327-336 (gaps)
22
1.10
ENST00000369622
10
ENSE00000760232
chr6:
86329135-86328986
150
HNRPQ_HUMAN
337-386
50
1
A:337-386
50
1.11
ENST00000369622
11
ENSE00000760231
chr6:
86328657-86328536
122
HNRPQ_HUMAN
387-427
41
1
A:387-424
38
1.12c
ENST00000369622
12c
ENSE00001827916
chr6:
86325065-86323824
1242
HNRPQ_HUMAN
427-623
197
1
A:425-429 (gaps)
11
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2dgua_ (A:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
automated matches
(67)
Protein domain
:
automated matches
(67)
Human (Homo sapiens) [TaxId: 9606]
(56)
1a
d2dgua_
A:
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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