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2DG1
Biol. Unit 7
Info
Asym.Unit (355 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (63 KB)
Biol.Unit 3 (63 KB)
Biol.Unit 4 (64 KB)
Biol.Unit 5 (64 KB)
Biol.Unit 6 (63 KB)
Biol.Unit 7 (177 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DRP35, A 35KDA DRUG RESPONSIVE PROTEIN FROM STAPHYLOCOCCUS AUREUS, COMPLEXED WITH CA2+
Authors
:
Y. Tanaka, Y. Ohki, K. Morikawa, M. Yao, N. Watanabe, T. Ohta, I. Tanaka
Date
:
07 Mar 06 (Deposition) - 12 Dec 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.72
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: A,B,C (1x)
Keywords
:
Beta Propeller, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
Y. Tanaka, K. Morikawa, Y. Ohki, M. Yao, K. Tsumoto, N. Watanabe, T. Ohta, I. Tanaka
Structural And Mutational Analyses Of Drp35 From Staphylococcus Aureus: A Possible Mechanism For Its Lactonase Activity
J. Biol. Chem. V. 282 5770 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC8 (SOFTWARE)
06: AC9 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:48 , ASP A:138 , ASN A:185 , ASP A:236 , SER A:237 , HOH A:5068 , HOH A:5220 , HOH A:5221
BINDING SITE FOR RESIDUE CA A 3001
02
AC2
SOFTWARE
GLU B:48 , ASP B:138 , ASN B:185 , ASP B:236 , SER B:237 , HOH B:5029 , HOH B:5221 , HOH B:5222
BINDING SITE FOR RESIDUE CA B 3002
03
AC3
SOFTWARE
GLU C:48 , ASP C:138 , ASN C:185 , ASP C:236 , SER C:237 , HOH C:5049 , HOH C:5212 , HOH C:5213
BINDING SITE FOR RESIDUE CA C 3003
04
AC7
SOFTWARE
SER A:110 , GLY A:112 , ASP A:130 , THR A:133 , TYR A:135 , HOH A:5293
BINDING SITE FOR RESIDUE CA A 3007
05
AC8
SOFTWARE
SER B:110 , GLY B:112 , ASP B:130 , THR B:133 , TYR B:135
BINDING SITE FOR RESIDUE CA B 3008
06
AC9
SOFTWARE
SER C:110 , GLY C:112 , ASP C:130 , THR C:133 , TYR C:135
BINDING SITE FOR RESIDUE CA C 3009
07
BC4
SOFTWARE
CYS A:239 , ILE A:240 , GLN A:286 , PHE A:287 , GLY A:318 , HIS A:319 , HOH A:5053 , HOH A:5055
BINDING SITE FOR RESIDUE GOL A 5001
08
BC5
SOFTWARE
CYS B:239 , ILE B:240 , GLN B:286 , PHE B:287 , GLY B:318 , HIS B:319 , HOH B:5017 , HOH B:5373
BINDING SITE FOR RESIDUE GOL B 5002
09
BC6
SOFTWARE
CYS C:239 , ILE C:240 , GLN C:286 , PHE C:287 , GLY C:318 , HIS C:319 , HOH C:5046 , HOH C:5072
BINDING SITE FOR RESIDUE GOL C 5003
10
CC1
SOFTWARE
LYS A:16 , HOH A:5076 , SER B:27 , HOH B:5147 , HOH B:5240 , HOH B:5300
BINDING SITE FOR RESIDUE GOL A 5007
11
CC2
SOFTWARE
LYS B:16 , ILE B:23 , HOH B:5055 , HOH B:5225 , SER C:27 , THR C:31
BINDING SITE FOR RESIDUE GOL B 5008
12
CC3
SOFTWARE
SER A:27 , HOH A:5061 , HOH A:5225 , LYS C:16 , HOH C:5066
BINDING SITE FOR RESIDUE GOL C 5009
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2dg1a_ (A:)
1b: SCOP_d2dg1b_ (B:)
1c: SCOP_d2dg1c_ (C:)
1d: SCOP_d2dg1d_ (D:)
1e: SCOP_d2dg1e_ (E:)
1f: SCOP_d2dg1f_ (F:)
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Calcium-dependent phosphotriesterase
(35)
Family
:
SGL-like
(31)
Protein domain
:
automated matches
(7)
Staphylococcus aureus [TaxId: 1280]
(3)
1a
d2dg1a_
A:
1b
d2dg1b_
B:
1c
d2dg1c_
C:
1d
d2dg1d_
D:
1e
d2dg1e_
E:
1f
d2dg1f_
F:
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CATH Domains
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Pfam Domains
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Show PDB file:
Asym.Unit (355 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
Header - Biol.Unit 2
Biol.Unit 3 (63 KB)
Header - Biol.Unit 3
Biol.Unit 4 (64 KB)
Header - Biol.Unit 4
Biol.Unit 5 (64 KB)
Header - Biol.Unit 5
Biol.Unit 6 (63 KB)
Header - Biol.Unit 6
Biol.Unit 7 (177 KB)
Header - Biol.Unit 7
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