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2DEH
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Asym.Unit (72 KB)
Biol.Unit 1 (133 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TT0972 PROTEIN FORM THERMUS THERMOPHILUS WITH CL(-) IONS
Authors
:
E. Inagaki, N. Nakano, A. Shinkai, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
10 Feb 06 (Deposition) - 01 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (2x)
Keywords
:
Dodecamer, Flavin, Chloride Ion, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
E. Inagaki, N. Nakano, A. Shinkai, S. Yokoyama
Crystal Structure Of Tt0972 Protein Form Thermus Thermophilus
To Be Published
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: SODIUM ION (NAa)
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No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
NA
1
Ligand/Ion
SODIUM ION
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Sites
(3, 3)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:19 , GLU B:19 , GLU C:19 , GLU D:68
BINDING SITE FOR RESIDUE NA A 1001
2
AC2
SOFTWARE
LYS A:6 , LYS D:6 , LYS F:6
BINDING SITE FOR RESIDUE CL A 1002
3
AC3
SOFTWARE
LYS B:6 , LYS C:6 , LYS E:6
BINDING SITE FOR RESIDUE CL B 1003
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2deha_ (A:)
1b: SCOP_d2dehe_ (E:)
1c: SCOP_d2dehf_ (F:)
1d: SCOP_d2dehb_ (B:)
1e: SCOP_d2dehc_ (C:)
1f: SCOP_d2dehd_ (D:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Dodecin subunit-like
(56)
Superfamily
:
Dodecin-like
(33)
Family
:
Dodecin-like
(29)
Protein domain
:
automated matches
(24)
Thermus thermophilus [TaxId: 274]
(3)
1a
d2deha_
A:
1b
d2dehe_
E:
1c
d2dehf_
F:
1d
d2dehb_
B:
1e
d2dehc_
C:
1f
d2dehd_
D:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2dehC00 (C:2-68)
1b: CATH_2dehA00 (A:2-69)
1c: CATH_2dehB00 (B:2-69)
1d: CATH_2dehD00 (D:2-68)
1e: CATH_2dehE00 (E:2-68)
1f: CATH_2dehF00 (F:2-68)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dodecin subunit-like
(24)
Homologous Superfamily
:
Flavin-binding protein dodecin
(24)
Thermus thermophilus. Organism_taxid: 274.
(3)
1a
2dehC00
C:2-68
1b
2dehA00
A:2-69
1c
2dehB00
B:2-69
1d
2dehD00
D:2-68
1e
2dehE00
E:2-68
1f
2dehF00
F:2-68
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Pfam Domains
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